Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03400 and HMPREF1058_RS03395 are separated by 7 nucleotidesHMPREF1058_RS03395 and HMPREF1058_RS03390 are separated by 13 nucleotidesHMPREF1058_RS03390 and HMPREF1058_RS03385 are separated by 20 nucleotidesHMPREF1058_RS03385 and HMPREF1058_RS03380 are separated by 3 nucleotides HMPREF1058_RS03400: HMPREF1058_RS03400 - long-chain fatty acid--CoA ligase, at 288,693 to 289,907 _RS03400 HMPREF1058_RS03395: HMPREF1058_RS03395 - acyl carrier protein, at 289,915 to 290,139 _RS03395 HMPREF1058_RS03390: HMPREF1058_RS03390 - GNAT family N-acetyltransferase, at 290,153 to 290,626 _RS03390 HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852 _RS03385 HMPREF1058_RS03380: HMPREF1058_RS03380 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 291,856 to 292,965 _RS03380
Group Condition HMPREF1058_RS03400 HMPREF1058_RS03395 HMPREF1058_RS03390 HMPREF1058_RS03385 HMPREF1058_RS03380
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.1 N.D. -0.6 -0.8 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.2 N.D. -0.2 -0.8 -0.4
carbon source Amylose from potato 5 mg/ml (C) -0.4 N.D. -0.6 -0.0 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.1 N.D. +0.1 -0.9 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.3 N.D. -0.9 -0.3 +0.1
carbon source Dextran 5 mg/ml (C) +0.4 N.D. +0.0 -0.9 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.0 N.D. -0.5 +0.3 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.1 N.D. -0.4 -0.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.7 N.D. -0.6 -0.8 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.3 N.D. -0.3 -0.7 +0.3
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 N.D. +0.1 +0.7 -0.2
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.1 N.D. -0.8 +0.3 +0.7
carbon source D-Glucose (C) +0.3 N.D. +0.3 +0.4 -0.6
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.6 N.D. -0.5 +0.4 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.3 N.D. +0.6 -0.5 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.0 N.D. +0.6 -0.5 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.4 N.D. +0.8 -0.3 -0.2
carbon source D-Glucose (C) +0.4 N.D. +0.7 -0.3 +0.3
carbon source D-Raffinose 20 mM (C) +0.5 N.D. +0.5 +0.3 -0.1
carbon source D-Galactose 20 mM (C) +0.2 N.D. +0.8 +0.5 -0.1
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.3 N.D. +0.8 +0.1 +0.4
carbon source Sucrose 20 mM (C) +0.3 N.D. +0.6 +0.3 +0.3
carbon source NAG (C) +0.3 N.D. +0.8 -0.1 +0.5
carbon source D-Galactose (C) +0.4 N.D. +0.9 +0.2 +0.4
carbon source D-Galactose 20 mM (C) +0.5 N.D. +0.9 +0.5 +0.1
carbon source Pectic galactan from potato 5mg/ml (C) +0.5 N.D. +0.7 +0.7 +0.3
carbon source Sucrose 20 mM (C) +0.5 N.D. +0.7 +0.3 +0.8
carbon source D-Galactose (C) +0.2 N.D. +1.1 +0.5 +0.7
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.8 N.D. +1.0 +0.6 +0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 N.D. +2.5 +0.9 +0.9
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HMPREF1058_RS03400
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