Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS21675	HMPREF1058_RS21680	HMPREF1058_RS03035	HMPREF1058_RS03030	HMPREF1058_RS21685
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.0	-0.1	-1.6	+0.2	-4.4
carbon source	Dextran 5 mg/ml (C)	-0.0	-0.2	-0.2	+0.3	-4.2
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.3	-0.3	-0.6	-0.1	-2.4
carbon source	Polygalacturonic 5 mg/ml (C)	-0.1	-1.1	-0.0	+0.2	-1.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	-0.1	-0.3	+0.3	+0.2	-2.7
carbon source	D-Glucose (C)	-0.3	-0.7	-0.2	-0.4	-0.9
carbon source	Polygalacturonic 5 mg/ml (C)	-0.2	-0.7	+0.1	+0.1	-1.6
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen	+0.1	-0.1	+0.0	-0.0	-2.1
carbon source	a-Cyclodextrin (C)	-0.1	-0.1	+0.1	+0.3	-2.4
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.2	-0.7	-0.5	-0.4	-0.8
carbon source	NAG (C)	+0.1	-0.1	+0.3	-0.4	-2.1
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen	+0.1	+0.0	+0.2	+0.1	-2.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6	+0.2	+0.3	+0.0	+0.1	-2.7
carbon source	D-Glucosamine Hydrochloride 2.5 mg/ml (C)	+0.1	+0.0	-0.0	+0.1	-2.2
carbon source	D-Glucose-6-Phosphate 20 mM (C)	+0.1	-0.7	+0.2	+0.0	-1.2
carbon source	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)	+0.1	+0.4	+0.2	+0.3	-1.6
carbon source	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)	+0.1	+0.4	+0.2	+0.2	-1.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+0.5	+0.5	+0.5	+0.1	-1.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	+0.1	-0.7	-0.1	+0.1	+1.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	+0.2	-0.2	-0.2	-0.3	+1.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.2	-0.3	-0.2	+0.4	+1.3
carbon source	D-Galacturonic Acid 20 mM (C)	-0.0	-0.3	+0.8	+0.1	+0.9
carbon source	Sucrose 20 mM (C)	-0.0	-0.3	-0.2	-0.2	+2.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	+0.1	-0.4	+0.4	-0.0	+1.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	-0.2	+0.1	+0.9	+0.2	+0.8
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.5	+1.2	+0.2	+0.5	-0.3
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.3	+0.3	+0.8	+0.3	+1.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	-0.0	+0.3	+0.1	+0.4	+1.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	+0.1	+0.0	+0.2	+0.1	+2.3
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.2	+0.2	+0.3	-0.4	+2.6