Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03010 and HMPREF1058_RS03000 are separated by 251 nucleotidesHMPREF1058_RS03000 and HMPREF1058_RS02995 are separated by 12 nucleotidesHMPREF1058_RS02995 and HMPREF1058_RS02990 are separated by 36 nucleotidesHMPREF1058_RS02990 and HMPREF1058_RS02985 are separated by 4 nucleotides HMPREF1058_RS03010: HMPREF1058_RS03010 - hypothetical protein, at 33,878 to 34,312 _RS03010 HMPREF1058_RS03000: HMPREF1058_RS03000 - IMP dehydrogenase, at 34,564 to 36,039 _RS03000 HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389 _RS02995 HMPREF1058_RS02990: HMPREF1058_RS02990 - peptidyl-prolyl cis-trans isomerase, at 37,426 to 38,298 _RS02990 HMPREF1058_RS02985: HMPREF1058_RS02985 - peptidylprolyl isomerase, at 38,303 to 39,661 _RS02985
Group Condition HMPREF1058_RS03010 HMPREF1058_RS03000 HMPREF1058_RS02995 HMPREF1058_RS02990 HMPREF1058_RS02985
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -4.0 +0.1 -4.5 N.D.
carbon source D-Glucose 20 mM (C) N.D. -5.7 -0.3 -1.6 N.D.
carbon source D-Mannose 20 mM (C) N.D. -5.6 -0.2 -1.3 N.D.
carbon source D-Glucose 20 mM (C) N.D. -5.6 -0.3 -1.0 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -3.5 +0.0 -3.4 N.D.
carbon source D-Mannose 20 mM (C) N.D. -5.3 -0.1 -1.3 N.D.
carbon source NAG 20 mM (C) N.D. -5.6 -0.1 -0.9 N.D.
carbon source NAG 20 mM (C) N.D. -5.4 -0.1 -1.1 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) N.D. -5.4 -0.6 -0.5 N.D.
carbon source NAG 20 mM (C) N.D. -5.5 -0.3 -0.7 N.D.
carbon source D-Glucose 20 mM (C) N.D. -5.6 -0.3 -0.7 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. -5.4 +0.2 -1.4 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. -4.9 +0.2 -1.8 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -3.3 +0.0 -3.2 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -4.1 +0.1 -2.5 N.D.
carbon source D-Glucose (C) N.D. -4.2 +0.5 -2.0 N.D.
carbon source a-Cyclodextrin 2.5 mg/ml (C) N.D. -6.1 +0.3 +0.1 N.D.
carbon source beta-Cyclodextrin 2.5 mg/ml (C) N.D. -6.0 +0.3 +0.3 N.D.
carbon source D-Xylose 20 mM (C) N.D. -5.7 +0.1 +1.2 N.D.
carbon source D-Xylose 20 mM (C) N.D. -6.2 +0.1 +2.0 N.D.
carbon source D-Xylose (C) N.D. -5.4 +0.1 +1.2 N.D.
carbon source Beta-Lactose 20 mM (C) N.D. -5.7 +0.1 +1.6 N.D.
carbon source D-Xylose 20 mM (C) N.D. -6.0 +0.1 +2.0 N.D.
carbon source D-Xylose 20 mM (C) N.D. -6.0 +0.2 +1.9 N.D.
carbon source Beta-Lactose 20 mM (C) N.D. -5.7 +0.1 +1.8 N.D.
carbon source L-Rhamnose 20 mM (C) N.D. -5.1 +0.0 +1.6 N.D.
carbon source NAG 2.5 mg/ml (C) N.D. -4.5 +1.0 +1.9 N.D.
carbon source NAG 2.5 mg/ml (C) N.D. -4.6 +1.2 +2.0 N.D.
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) N.D. -4.4 +0.9 +2.2 N.D.
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) N.D. -3.9 +0.7 +2.7 N.D.
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