Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS02735 and HMPREF1058_RS02730 are separated by 214 nucleotidesHMPREF1058_RS02730 and HMPREF1058_RS02725 are separated by 164 nucleotidesHMPREF1058_RS02725 and HMPREF1058_RS02720 are separated by 121 nucleotidesHMPREF1058_RS02720 and HMPREF1058_RS02715 are separated by 11 nucleotides HMPREF1058_RS02735: HMPREF1058_RS02735 - zinc metallopeptidase, at 111,126 to 111,806 _RS02735 HMPREF1058_RS02730: HMPREF1058_RS02730 - response regulator, at 112,021 to 116,343 _RS02730 HMPREF1058_RS02725: HMPREF1058_RS02725 - DUF5060 domain-containing protein, at 116,508 to 118,112 _RS02725 HMPREF1058_RS02720: HMPREF1058_RS02720 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 118,234 to 118,848 _RS02720 HMPREF1058_RS02715: HMPREF1058_RS02715 - DeoR/GlpR transcriptional regulator, at 118,860 to 119,615 _RS02715
Group Condition HMPREF1058_RS02735 HMPREF1058_RS02730 HMPREF1058_RS02725 HMPREF1058_RS02720 HMPREF1058_RS02715
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -3.1 -0.2 +0.0 -0.2 -1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -2.9 -0.1 -0.2 -0.2 -1.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -2.4 -0.0 +0.4 -0.4 -2.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -2.3 -0.1 +0.2 -0.6 -2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -1.8 -0.2 +0.3 -1.1 -1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -2.8 +0.1 +0.5 -0.5 -2.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -2.5 -0.1 +0.1 -0.6 -1.6
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -0.3 +0.0 +0.2 -0.5 -3.5
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.3 +0.1 +0.0 -1.1 -2.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -2.5 -0.1 +0.3 -0.1 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -2.1 -0.2 +0.2 -0.4 -1.3
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.7 +0.0 +0.3 -1.1 -2.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -1.9 -0.0 +0.3 -0.8 -1.1
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -0.1 +0.1 +0.1 -0.4 -3.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 -1.9 -0.0 +0.0 -0.8 -0.8
carbon source Pectic galactan from potato 5mg/ml (C) -0.7 +0.0 -0.0 -1.1 -1.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -1.6 +0.2 +0.2 -1.1 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -1.6 -0.1 +0.3 -0.9 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -2.0 -0.1 +0.6 -0.4 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.8 -0.2 +0.4 -0.6 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -1.9 -0.0 +0.3 -0.4 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -1.6 -0.1 +0.4 -0.7 -1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -1.7 +0.0 +0.3 -0.6 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.9 +0.2 +0.1 -0.9 -1.6
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.9 +0.1 +0.3 -1.0 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -1.9 -0.2 +0.4 -0.4 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -1.8 -0.1 +0.3 -0.4 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -1.3 -0.0 +0.6 -0.7 -1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -1.2 +0.1 +0.4 -0.8 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.9 +0.2 +0.5 -1.1 -0.9
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