Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS02680 and HMPREF1058_RS02675 are separated by 400 nucleotidesHMPREF1058_RS02675 and HMPREF1058_RS02670 are separated by 10 nucleotidesHMPREF1058_RS02670 and HMPREF1058_RS02665 are separated by 1 nucleotidesHMPREF1058_RS02665 and HMPREF1058_RS02660 overlap by 4 nucleotides HMPREF1058_RS02680: HMPREF1058_RS02680 - histidine--tRNA ligase, at 126,755 to 128,119 _RS02680 HMPREF1058_RS02675: HMPREF1058_RS02675 - CRISPR-associated helicase/endonuclease Cas3, at 128,520 to 130,745 _RS02675 HMPREF1058_RS02670: HMPREF1058_RS02670 - Bro-N domain-containing protein, at 130,756 to 131,616 _RS02670 HMPREF1058_RS02665: HMPREF1058_RS02665 - type I-C CRISPR-associated protein Cas5, at 131,618 to 132,298 _RS02665 HMPREF1058_RS02660: HMPREF1058_RS02660 - type I-C CRISPR-associated protein Cas8c/Csd1, at 132,295 to 134,016 _RS02660
Group Condition HMPREF1058_RS02680 HMPREF1058_RS02675 HMPREF1058_RS02670 HMPREF1058_RS02665 HMPREF1058_RS02660
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 N.D. -0.0 +0.2 -1.5 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 N.D. -0.2 -0.1 -1.2 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. -0.2 +0.0 -1.8 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 N.D. +0.3 -0.2 -1.5 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -0.6 -0.5 -0.4 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 N.D. -0.3 -0.3 -0.7 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 N.D. -0.0 +0.2 -1.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 N.D. +0.0 +0.1 -1.5 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 N.D. -0.0 +0.0 -1.3 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. +0.1 +0.0 -1.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 N.D. -0.2 +0.1 -1.1 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. -0.2 -0.2 -0.7 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 N.D. -0.1 +0.1 -0.8 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 N.D. -0.1 +0.0 -0.7 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 N.D. +0.2 -0.1 -0.9 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 N.D. +0.3 -0.1 -0.9 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 N.D. -0.1 +0.2 -0.5 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. +0.1 +0.1 -0.7 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 N.D. +0.0 +0.2 -1.0 +0.1
carbon source Dextran 5 mg/ml (C) N.D. +0.1 +0.2 -0.6 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. -0.3 -0.3 +0.4 -0.4
carbon source D-Galactose 20 mM (C) N.D. -0.0 +0.2 -0.8 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 N.D. -0.2 +0.1 +0.4 -0.5
carbon source D-Galactose 20 mM (C) N.D. +0.2 +0.3 -0.7 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. +0.2 -0.2 +0.3 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. +0.1 -0.2 +0.4 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.2 +0.1 +0.6 -0.4
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen N.D. -0.0 +0.2 +0.6 -0.4
carbon source Arabinan from sugar beet 5mg/ml (C) N.D. -0.1 +0.2 +0.7 +0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. +0.4 +0.4 +0.7 +0.1
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HMPREF1058_RS02680
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