Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS02520 and HMPREF1058_RS02515 are separated by 525 nucleotidesHMPREF1058_RS02515 and HMPREF1058_RS02510 are separated by 64 nucleotidesHMPREF1058_RS02510 and HMPREF1058_RS02505 are separated by 27 nucleotidesHMPREF1058_RS02505 and HMPREF1058_RS02500 are separated by 79 nucleotides HMPREF1058_RS02520: HMPREF1058_RS02520 - urocanate hydratase, at 162,934 to 164,931 _RS02520 HMPREF1058_RS02515: HMPREF1058_RS02515 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 165,457 to 166,674 _RS02515 HMPREF1058_RS02510: HMPREF1058_RS02510 - DUF2027 domain-containing protein, at 166,739 to 167,827 _RS02510 HMPREF1058_RS02505: HMPREF1058_RS02505 - PaaI family thioesterase, at 167,855 to 168,265 _RS02505 HMPREF1058_RS02500: HMPREF1058_RS02500 - histidine decarboxylase, at 168,345 to 168,953 _RS02500
Group Condition HMPREF1058_RS02520 HMPREF1058_RS02515 HMPREF1058_RS02510 HMPREF1058_RS02505 HMPREF1058_RS02500
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -3.0 -0.2 +0.0 -0.3 +0.3
carbon source L-Rhamnose 20 mM (C) -2.5 -0.3 -0.1 -0.1 -0.2
carbon source Arabinan from sugar beet 5mg/ml (C) -3.3 -0.5 +0.4 +0.2 +0.1
carbon source Pectic galactan from potato 5mg/ml (C) -2.8 -0.7 +0.0 -0.0 +0.5
carbon source Beta-Lactose 20 mM (C) -2.4 -0.4 -0.1 -0.1 +0.2
carbon source Beta-Lactose 20 mM (C) -2.0 -0.6 +0.1 -0.2 -0.0
carbon source Dextrin from potato starch 5 mg/ml (C) -2.6 -0.3 +0.1 +0.1 -0.1
carbon source D-Galacturonic Acid 20 mM (C) -2.3 -0.2 +0.2 -0.3 +0.0
carbon source Arabinan from sugar beet 5mg/ml (C) -3.2 -0.1 +0.4 +0.0 +0.3
carbon source D-Maltose 20 mM (C) -2.6 -0.4 +0.3 -0.1 +0.2
carbon source L-Rhamnose 20 mM (C) -2.3 -0.3 -0.1 -0.0 +0.2
carbon source D-Raffinose 20 mM (C) -2.0 -0.6 -0.1 +0.0 +0.3
carbon source L-Arabinose 20 mM (C) -2.3 -0.2 +0.1 -0.0 +0.1
carbon source Pectic galactan from potato 5mg/ml (C) -2.6 -0.3 -0.0 +0.1 +0.5
carbon source Dextrin from potato starch 5 mg/ml (C) -2.4 +0.2 +0.0 -0.0 -0.0
carbon source (+)-Arabinogalactan 5 mg/ml (C) -2.4 -0.2 +0.4 +0.2 -0.1
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -2.7 +0.1 +0.1 +0.2 +0.2
carbon source Polygalacturonic 5 mg/ml (C) -2.4 -0.4 +0.2 -0.2 +0.7
carbon source D-Maltose 20 mM (C) -2.7 +0.1 +0.1 -0.1 +0.5
carbon source beta-Cyclodextrin 5 mg/ml (C) -2.7 +0.3 +0.4 -0.4 +0.3
carbon source beta-Cyclodextrin 5 mg/ml (C) -2.4 +0.2 +0.3 +0.0 -0.0
carbon source D-Maltose 20 mM (C) -2.6 +0.5 +0.4 -0.0 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.2 -1.8 +0.1 +0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.2 -1.6 +0.1 +0.3 +0.6
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.8 +0.9 +0.2 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +1.0 +0.4 +0.3 -0.4 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +1.7 +0.6 +0.4 -0.5 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.0 +0.1 +0.8 -0.0 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.1 +0.3 +0.5 -0.1 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +2.1 +0.5 +0.6 -0.0 +1.3
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