Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS02485 and HMPREF1058_RS02480 are separated by 5 nucleotidesHMPREF1058_RS02480 and HMPREF1058_RS02475 are separated by 366 nucleotidesHMPREF1058_RS02475 and HMPREF1058_RS02470 are separated by 78 nucleotidesHMPREF1058_RS02470 and HMPREF1058_RS02465 overlap by 4 nucleotides HMPREF1058_RS02485: HMPREF1058_RS02485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 171,576 to 172,595 _RS02485 HMPREF1058_RS02480: HMPREF1058_RS02480 - electron transfer flavoprotein subunit beta/FixA family protein, at 172,601 to 173,494 _RS02480 HMPREF1058_RS02475: HMPREF1058_RS02475 - hypothetical protein, at 173,861 to 174,119 _RS02475 HMPREF1058_RS02470: HMPREF1058_RS02470 - hypothetical protein, at 174,198 to 175,262 _RS02470 HMPREF1058_RS02465: HMPREF1058_RS02465 - hypothetical protein, at 175,259 to 175,837 _RS02465
Group Condition HMPREF1058_RS02485 HMPREF1058_RS02480 HMPREF1058_RS02475 HMPREF1058_RS02470 HMPREF1058_RS02465
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -3.7 -5.2 -0.2 +0.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -4.8 -4.4 +0.2 +0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -4.7 -4.4 +0.3 +0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -4.6 -4.1 +0.9 -0.0 -0.3
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -3.9 -3.7 +0.2 -0.1 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -4.3 -3.8 +0.6 -0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -4.5 -4.0 +1.0 +0.2 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -4.6 -3.7 +0.4 +0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -4.5 -3.7 +0.4 +0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -4.7 -3.8 +0.4 +0.6 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -4.4 -3.8 +0.8 +0.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -4.5 -3.7 +0.3 +0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -4.5 -3.7 +1.0 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -4.3 -3.5 +1.0 +0.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -4.3 -3.5 +0.8 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -4.0 -3.7 +1.0 +0.1 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -4.1 -3.3 +1.1 -0.1 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -4.2 -3.4 +1.4 +0.1 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -4.3 -3.5 +1.4 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -4.0 -3.3 +0.8 +0.5 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -3.7 -3.1 +0.8 +0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -4.1 -2.9 +1.0 +0.3 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -3.5 -2.9 +1.1 -0.3 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +3.3 +3.3 -0.3 +0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +3.3 +3.2 -0.2 +0.6 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 +3.3 +3.3 -0.1 +0.5 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +3.9 +4.2 +0.1 +0.1 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +3.7 +4.0 +0.1 +0.5 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +4.0 +4.3 -0.2 +0.6 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +4.2 +4.8 +0.2 +0.7 +0.9
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HMPREF1058_RS02485
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