Fitness for 3 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS02020 and HMPREF1058_RS02015 overlap by 4 nucleotidesHMPREF1058_RS02015 and HMPREF1058_RS02010 are separated by 207 nucleotides HMPREF1058_RS02020: HMPREF1058_RS02020 - hypothetical protein, at 546 to 923 _RS02020 HMPREF1058_RS02015: HMPREF1058_RS02015 - ASCH domain-containing protein, at 920 to 1,465 _RS02015 HMPREF1058_RS02010: HMPREF1058_RS02010 - hypothetical protein, at 1,673 to 1,855 _RS02010
Group Condition HMPREF1058_RS02020 HMPREF1058_RS02015 HMPREF1058_RS02010
carbon source Amylose from potato 5 mg/ml (C) -0.5 +0.2 -1.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 -0.2 -1.2
carbon source Pectic galactan from potato 5mg/ml (C) -0.7 +0.2 -0.8
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.9 +0.2 -0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.2 +0.7 -0.3
carbon source Sucrose 20 mM (C) +0.3 +0.5 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.1 +0.8 -0.7
carbon source Polygalacturonic 5 mg/ml (C) +0.1 +0.6 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.3 +0.2 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.6 +0.6 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.3 +0.7 +1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.9 +0.3 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.3 +1.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.7 +0.9 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.3 +0.4 +1.3
carbon source D-Galactose 20 mM (C) +1.2 +0.3 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +1.0 +0.5 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.6 +1.0 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.8 +0.7 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +1.0 +0.6 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +1.3 +0.8 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +1.5 +0.7 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +1.2 +0.9 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +1.4 +1.1 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +1.1 +1.2 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +1.6 +1.2 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.9 +0.9 +1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.5 +1.4 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.5 +1.3 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +1.6 +1.3 +1.5
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