Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS02005 and HMPREF1058_RS02000 are separated by 146 nucleotidesHMPREF1058_RS02000 and HMPREF1058_RS01995 are separated by 56 nucleotidesHMPREF1058_RS01995 and HMPREF1058_RS01990 are separated by 183 nucleotidesHMPREF1058_RS01990 and HMPREF1058_RS01985 overlap by 35 nucleotides HMPREF1058_RS02005: HMPREF1058_RS02005 - hypothetical protein, at 1,946 to 2,383 _RS02005 HMPREF1058_RS02000: HMPREF1058_RS02000 - type II toxin-antitoxin system HicA family toxin, at 2,530 to 2,715 _RS02000 HMPREF1058_RS01995: HMPREF1058_RS01995 - hypothetical protein, at 2,772 to 3,176 _RS01995 HMPREF1058_RS01990: HMPREF1058_RS01990 - hypothetical protein, at 3,360 to 3,746 _RS01990 HMPREF1058_RS01985: HMPREF1058_RS01985 - transposase, at 3,712 to 4,704 _RS01985
Group Condition HMPREF1058_RS02005 HMPREF1058_RS02000 HMPREF1058_RS01995 HMPREF1058_RS01990 HMPREF1058_RS01985
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.4 -0.8 -3.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.3 -0.9 -2.8 N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.0 -0.4 -2.4 N.D. N.D.
carbon source D-Mannose (C) -0.4 +0.3 -2.3 N.D. N.D.
carbon source D-Galactose 20 mM (C) +0.5 -0.2 -2.0 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +1.2 -1.2 -1.5 N.D. N.D.
carbon source D-Galactose 20 mM (C) -0.3 +1.1 -2.4 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +1.1 -1.0 -1.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +1.6 -0.7 -2.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +2.0 -0.8 -2.4 N.D. N.D.
carbon source NAG 20 mM (C) +0.3 +0.8 -2.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +1.3 -0.1 -2.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +1.0 +0.1 -1.9 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +2.0 -0.4 -2.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +2.5 -0.5 -2.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +1.0 -1.9 +0.9 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +1.3 +0.2 -1.4 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +1.2 +0.5 -1.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +1.4 +0.2 -1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +2.5 -0.1 -1.9 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +2.1 -0.8 -0.8 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.8 +0.2 -1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +2.0 +0.3 -1.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +2.6 -0.3 -1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +1.2 -0.9 +1.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +2.1 +0.5 -1.2 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +2.1 +0.7 -1.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +2.5 -0.7 -0.1 N.D. N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +1.2 +1.1 -0.4 N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +1.0 +0.6 +1.6 N.D. N.D.
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HMPREF1058_RS02005
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HMPREF1058_RS02000
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HMPREF1058_RS01985
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