Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21540 and HMPREF1058_RS01965 are separated by 51 nucleotidesHMPREF1058_RS01965 and HMPREF1058_RS01960 are separated by 12 nucleotidesHMPREF1058_RS01960 and HMPREF1058_RS21170 are separated by 3 nucleotidesHMPREF1058_RS21170 and HMPREF1058_RS01955 are separated by 105 nucleotides HMPREF1058_RS21540: HMPREF1058_RS21540 - hypothetical protein, at 5,704 to 5,856 _RS21540 HMPREF1058_RS01965: HMPREF1058_RS01965 - hypothetical protein, at 5,908 to 6,105 _RS01965 HMPREF1058_RS01960: HMPREF1058_RS01960 - hypothetical protein, at 6,118 to 6,405 _RS01960 HMPREF1058_RS21170: HMPREF1058_RS21170 - DUF3873 family protein, at 6,409 to 6,615 _RS21170 HMPREF1058_RS01955: HMPREF1058_RS01955 - hypothetical protein, at 6,721 to 7,173 _RS01955
Group Condition HMPREF1058_RS21540 HMPREF1058_RS01965 HMPREF1058_RS01960 HMPREF1058_RS21170 HMPREF1058_RS01955
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 N.D. N.D. -1.3 -1.9 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 N.D. N.D. -1.6 -1.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 N.D. N.D. -2.2 -0.9 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 N.D. N.D. -1.2 -1.0 -0.6
carbon source Dextran 5 mg/ml (C) N.D. N.D. -1.6 +0.2 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. N.D. -1.5 -0.4 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. N.D. -1.5 -0.8 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 N.D. N.D. -1.0 -0.7 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. N.D. -0.7 -1.0 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 N.D. N.D. -0.3 -1.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 N.D. N.D. -0.5 -0.9 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. N.D. -1.6 -0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. N.D. -0.8 -1.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 N.D. N.D. -1.3 -0.1 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 N.D. N.D. -1.2 -0.5 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 N.D. N.D. -0.4 -0.8 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 N.D. N.D. -0.9 -0.9 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 N.D. N.D. -0.5 -0.9 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 N.D. N.D. -0.4 -0.8 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. N.D. -0.8 -1.0 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 N.D. N.D. +0.4 -1.0 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. N.D. -1.6 +0.2 +0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. N.D. -1.0 -0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 N.D. N.D. +0.4 -1.1 +0.2
carbon source Amylose from potato 5 mg/ml (C) N.D. N.D. -0.1 +0.8 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 N.D. N.D. +0.8 -0.1 -0.8
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. N.D. +0.7 -1.2 +0.8
carbon source NAG (C) N.D. N.D. +1.2 -0.6 -0.3
carbon source D-Glucose (C) N.D. N.D. +1.0 -0.5 +0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. +2.2 +0.2 +0.3
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HMPREF1058_RS21540
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HMPREF1058_RS01965
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HMPREF1058_RS01955
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