Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01930 and HMPREF1058_RS01925 are separated by 4 nucleotidesHMPREF1058_RS01925 and HMPREF1058_RS01920 are separated by 174 nucleotidesHMPREF1058_RS01920 and HMPREF1058_RS01915 are separated by 4 nucleotidesHMPREF1058_RS01915 and HMPREF1058_RS01910 are separated by 18 nucleotides HMPREF1058_RS01930: HMPREF1058_RS01930 - type II toxin-antitoxin system HigB family toxin, at 13,142 to 13,435 _RS01930 HMPREF1058_RS01925: HMPREF1058_RS01925 - helix-turn-helix domain-containing protein, at 13,440 to 13,805 _RS01925 HMPREF1058_RS01920: HMPREF1058_RS01920 - hypothetical protein, at 13,980 to 14,615 _RS01920 HMPREF1058_RS01915: HMPREF1058_RS01915 - hypothetical protein, at 14,620 to 15,471 _RS01915 HMPREF1058_RS01910: HMPREF1058_RS01910 - hypothetical protein, at 15,490 to 16,572 _RS01910
Group Condition HMPREF1058_RS01930 HMPREF1058_RS01925 HMPREF1058_RS01920 HMPREF1058_RS01915 HMPREF1058_RS01910
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 -4.1 +0.3 -0.1 -0.2
carbon source D-Galacturonic Acid 20 mM (C) +0.2 -3.7 -0.0 -0.1 +0.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 -3.3 +0.1 -0.4 +0.0
carbon source D-Mannose 20 mM (C) +0.6 -3.1 +0.1 +0.2 -0.8
carbon source D-Glucosamine Hydrochloride 20 mM (C) +0.7 -2.6 +0.5 -0.3 -0.0
carbon source D-Glucose 20 mM (C) +0.2 -2.8 +0.8 +0.4 +0.1
carbon source Sucrose 20 mM (C) +0.6 -2.4 +1.2 +0.1 -0.8
carbon source D-Mannose 20 mM (C) +0.8 -2.3 +0.3 +0.5 +0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 -1.7 +0.9 +0.3 +1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +1.6 +0.1 -0.5 +1.3 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +1.9 +0.1 -0.7 +1.2 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +1.6 -0.5 -0.5 +1.9 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +1.7 +0.2 -0.6 +1.3 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +1.5 +0.9 -0.4 +1.4 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +1.3 +1.1 +0.6 +0.8 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +1.8 +0.6 +0.4 +1.6 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +1.9 +0.8 +0.6 +1.4 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +2.1 +0.9 +0.3 +1.4 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +2.2 +0.3 +0.3 +1.7 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +1.8 +0.1 +0.1 +1.7 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +1.7 +1.2 +0.1 +1.6 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +2.0 +0.6 -0.2 +2.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +1.9 -0.0 +0.6 +1.9 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +2.6 +1.0 +0.9 +1.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +1.8 +1.0 +0.5 +1.8 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +1.9 +1.4 +0.5 +1.8 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.4 +0.9 +1.1 +2.0 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.5 +1.1 +1.1 +2.3 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +2.3 +1.4 +0.7 +2.0 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +2.4 +1.3 +0.8 +2.2 +1.0
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