Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01905 and HMPREF1058_RS01900 overlap by 4 nucleotidesHMPREF1058_RS01900 and HMPREF1058_RS01895 overlap by 10 nucleotidesHMPREF1058_RS01895 and HMPREF1058_RS21375 overlap by 4 nucleotidesHMPREF1058_RS21375 and HMPREF1058_RS01885 overlap by 4 nucleotides HMPREF1058_RS01905: HMPREF1058_RS01905 - hypothetical protein, at 16,569 to 16,883 _RS01905 HMPREF1058_RS01900: HMPREF1058_RS01900 - hypothetical protein, at 16,880 to 17,203 _RS01900 HMPREF1058_RS01895: HMPREF1058_RS01895 - hypothetical protein, at 17,194 to 17,493 _RS01895 HMPREF1058_RS21375: HMPREF1058_RS21375 - DUF2829 domain-containing protein, at 17,490 to 18,203 _RS21375 HMPREF1058_RS01885: HMPREF1058_RS01885 - hypothetical protein, at 18,200 to 18,595 _RS01885
Group Condition HMPREF1058_RS01905 HMPREF1058_RS01900 HMPREF1058_RS01895 HMPREF1058_RS21375 HMPREF1058_RS01885
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -1.9 -3.4 -0.6 +0.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -2.1 -1.3 -1.4 +0.0 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -2.5 -0.9 -0.3 -0.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -1.6 -1.5 -0.2 -0.3 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -1.3 -2.2 -0.1 +0.0 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -1.9 -1.0 -0.4 +0.1 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -1.4 -1.1 -1.1 -0.0 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -1.9 -1.4 -0.1 -0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -1.8 -0.9 -0.8 +0.0 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -1.7 -0.6 -1.1 +0.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -1.5 -1.6 +0.1 -0.1 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -1.4 -1.7 -0.2 +0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -2.5 -0.8 -0.1 +0.0 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 -1.5 -0.8 -0.4 +0.1 -0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 -2.4 -0.1 -0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -1.5 -1.3 -0.2 +0.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.0 -1.0 -0.8 +0.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.9 -1.6 -0.6 +0.3 -0.0
carbon source Dextran 5 mg/ml (C) +0.7 -1.8 -0.4 -0.7 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -1.7 -1.1 -0.3 +0.1 +0.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.0 -1.5 -0.9 +0.2 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -1.9 -0.8 +0.8 +0.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.8 -1.4 +1.1 +0.0 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.5 -1.4 +1.1 +0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.2 -1.4 +1.0 -0.2 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.7 -0.9 -0.6 +0.6 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.8 -0.6 +1.1 +0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.6 -1.1 +0.6 -0.3 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.7 -1.2 +0.4 +0.4 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +1.1 -0.5 +0.6 +0.9 +0.9
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HMPREF1058_RS01905
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HMPREF1058_RS01900
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HMPREF1058_RS21375
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HMPREF1058_RS01885
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