Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS0120065 and HMPREF1058_RS01860 are separated by 1819 nucleotidesHMPREF1058_RS01860 and HMPREF1058_RS01855 are separated by 18 nucleotidesHMPREF1058_RS01855 and HMPREF1058_RS01850 overlap by 20 nucleotidesHMPREF1058_RS01850 and HMPREF1058_RS21710 are separated by 16 nucleotides HMPREF1058_RS0120065: HMPREF1058_RS0120065 - hypothetical protein, at 25,132 to 27,336 _RS0120065 HMPREF1058_RS01860: HMPREF1058_RS01860 - hypothetical protein, at 29,156 to 30,184 _RS01860 HMPREF1058_RS01855: HMPREF1058_RS01855 - hypothetical protein, at 30,203 to 30,496 _RS01855 HMPREF1058_RS01850: HMPREF1058_RS01850 - hypothetical protein, at 30,477 to 30,896 _RS01850 HMPREF1058_RS21710: HMPREF1058_RS21710 - hypothetical protein, at 30,913 to 31,190 _RS21710
Group Condition HMPREF1058_RS0120065 HMPREF1058_RS01860 HMPREF1058_RS01855 HMPREF1058_RS01850 HMPREF1058_RS21710
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.2 -0.3 -1.1 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.2 -0.3 -0.7 -0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.1 -0.1 -0.7 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.2 -0.6 -0.5 -0.5 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -0.5 -1.0 -0.1 N.D.
carbon source NAG (C) -0.1 +0.2 -1.1 -0.2 N.D.
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) -0.2 -0.1 -1.3 +0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.2 +0.2 -0.5 -0.9 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.3 +0.2 -1.5 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.5 +0.4 -1.5 +0.4 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.1 +0.3 -0.7 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.9 +0.3 -0.7 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.3 -0.5 +0.6 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.5 +0.3 +0.6 -0.6 N.D.
carbon source Dextran 5 mg/ml (C) +0.4 -0.4 +0.9 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.5 +0.1 +0.9 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.6 +0.2 -0.3 +0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.8 +0.3 -0.4 +0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.7 +0.7 -0.3 +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.5 +1.0 -0.4 +0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.4 +0.9 -0.2 +0.5 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.5 +0.1 +1.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.6 +0.5 +0.4 +0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.5 +0.5 +0.4 +0.6 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.7 +1.4 +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.6 +0.7 +0.5 +0.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.5 +0.9 +1.1 +0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.8 +1.2 +0.0 +1.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.7 +0.9 +0.7 +0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.6 +0.8 +1.9 +1.3 N.D.
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