Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21545 and HMPREF1058_RS21715 overlap by 1 nucleotidesHMPREF1058_RS21715 and HMPREF1058_RS01820 are separated by 296 nucleotidesHMPREF1058_RS01820 and HMPREF1058_RS01815 are separated by 12 nucleotidesHMPREF1058_RS01815 and HMPREF1058_RS01810 are separated by 162 nucleotides HMPREF1058_RS21545: HMPREF1058_RS21545 - hypothetical protein, at 35,477 to 35,635 _RS21545 HMPREF1058_RS21715: HMPREF1058_RS21715 - hypothetical protein, at 35,635 to 36,171 _RS21715 HMPREF1058_RS01820: HMPREF1058_RS01820 - hypothetical protein, at 36,468 to 36,710 _RS01820 HMPREF1058_RS01815: HMPREF1058_RS01815 - phage integrase SAM-like domain-containing protein, at 36,723 to 37,964 _RS01815 HMPREF1058_RS01810: HMPREF1058_RS01810 - tRNA-Ala, at 38,127 to 38,200 _RS01810
Group Condition HMPREF1058_RS21545 HMPREF1058_RS21715 HMPREF1058_RS01820 HMPREF1058_RS01815 HMPREF1058_RS01810
carbon source D-Galactose 20 mM (C) -2.0 -0.0 -1.4 +0.2 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -2.3 +0.3 +0.3 -0.2 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.5 -0.4 -1.8 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +1.1 +0.6 -3.0 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.9 +0.9 -0.5 -0.3 N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.8 +0.4 +1.3 +0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 +0.6 +0.6 +1.1 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +1.5 +0.7 -0.1 -0.1 N.D.
carbon source Polygalacturonic 5 mg/ml (C) +2.1 -0.0 -0.0 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.8 +1.0 +0.7 +0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +1.2 +0.9 +0.2 +0.2 N.D.
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.7 +0.3 +1.3 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +1.0 +0.5 +1.0 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +1.6 +1.0 +0.1 +0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +1.1 +1.1 +1.0 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.7 +1.7 +0.8 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 +1.0 +0.6 +1.3 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 +1.0 +0.5 +1.3 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +1.1 +1.0 +0.9 -0.1 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.8 -0.1 +1.9 +0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +1.4 +1.0 +0.6 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +1.4 +1.3 +0.6 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.7 +0.8 +1.7 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +1.3 +1.5 +0.4 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.8 +0.7 +1.7 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +1.6 +1.0 +1.0 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +1.4 +1.0 +1.3 -0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +1.8 +1.4 +0.6 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +1.5 +1.2 +1.4 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 +1.3 +1.0 +2.0 -0.0 N.D.
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