Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01780 and HMPREF1058_RS01775 are separated by 33 nucleotidesHMPREF1058_RS01775 and HMPREF1058_RS01770 are separated by 190 nucleotidesHMPREF1058_RS01770 and HMPREF1058_RS01765 are separated by 166 nucleotidesHMPREF1058_RS01765 and HMPREF1058_RS01760 are separated by 165 nucleotides HMPREF1058_RS01780: HMPREF1058_RS01780 - 3'-5' exonuclease, at 44,770 to 45,258 _RS01780 HMPREF1058_RS01775: HMPREF1058_RS01775 - YigZ family protein, at 45,292 to 45,894 _RS01775 HMPREF1058_RS01770: HMPREF1058_RS01770 - porin, at 46,085 to 47,098 _RS01770 HMPREF1058_RS01765: HMPREF1058_RS01765 - excinuclease ABC subunit UvrB, at 47,265 to 49,298 _RS01765 HMPREF1058_RS01760: HMPREF1058_RS01760 - outer membrane protein assembly factor BamD, at 49,464 to 50,300 _RS01760
Group Condition HMPREF1058_RS01780 HMPREF1058_RS01775 HMPREF1058_RS01770 HMPREF1058_RS01765 HMPREF1058_RS01760
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -1.1 -1.9 -4.7 -4.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.9 -1.5 -4.3 -3.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.6 -1.0 -3.1 -3.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.9 -1.4 -2.0 -3.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -2.8 -0.8 +0.7 -3.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -2.7 -0.5 +0.7 -4.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -0.8 -1.2 -1.7 -2.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.6 -0.6 -2.3 -1.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -1.9 -0.9 +1.0 -3.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.8 -0.9 +0.1 -3.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -1.5 -0.7 +0.9 -3.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.6 -0.5 -1.9 -1.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.9 -0.4 -0.2 -3.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -1.8 -0.3 +1.1 -3.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -1.3 -0.3 +0.9 -3.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.3 -0.4 -1.6 -1.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.5 -0.8 -0.3 -2.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.6 -0.4 -1.3 -1.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.2 -0.4 -1.9 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.6 -0.4 -0.9 -1.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.4 -0.1 -1.6 -1.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.1 -0.3 +0.8 -3.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -0.3 -0.2 -1.2 -1.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 -0.3 -0.4 +0.0 -2.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -0.2 -0.4 -1.0 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.6 -0.4 -0.2 -1.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.0 -0.2 +0.5 -1.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.5 +0.1 -0.1 -1.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.4 -0.9 +0.8 -1.0 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 +0.3 +0.9 -0.7 N.D.
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HMPREF1058_RS01780
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