Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS01625	HMPREF1058_RS01620	HMPREF1058_RS01615	HMPREF1058_RS01610	HMPREF1058_RS01605
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.2	-2.6	-3.7	N.D.	+0.9
carbon source	Dextran 5 mg/ml (C)	-0.6	-3.5	-0.3	N.D.	+1.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+1.2	-2.3	-2.3	N.D.	+0.7
carbon source	Arabinan from sugar beet 5mg/ml (C)	-0.7	-2.3	+0.5	N.D.	+0.7
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	+0.6	-1.4	-1.2	N.D.	+0.4
carbon source	Dextran 5 mg/ml (C)	+0.2	-3.5	+0.7	N.D.	+1.1
carbon source	D-Glucose 20 mM (C)	-0.1	+1.0	-2.9	N.D.	+0.6
carbon source	NAG (C)	+0.6	-3.4	+0.7	N.D.	+0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	+0.6	+0.4	-2.5	N.D.	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+0.7	-2.3	+0.8	N.D.	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	+1.6	+0.1	-2.7	N.D.	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+1.0	+0.0	-2.5	N.D.	+0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	+0.9	+0.6	-2.4	N.D.	+0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7	+1.7	-1.7	-0.1	N.D.	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5	+1.2	-1.6	+0.6	N.D.	+0.1
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+1.8	+0.5	-0.2	N.D.	-1.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7	+1.5	-1.7	+0.8	N.D.	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+2.1	-1.1	-0.4	N.D.	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	+2.2	+0.2	-0.3	N.D.	-1.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day5	+1.3	-1.4	+1.0	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	+1.7	+0.8	-1.4	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2	+1.3	-1.2	+1.1	N.D.	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	+1.7	-1.2	+1.1	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+1.6	-2.3	+2.2	N.D.	+1.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+1.7	+0.6	+0.9	N.D.	-0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+1.7	+1.0	-0.4	N.D.	+0.6
carbon source	D-Glucose (C)	-0.7	+1.1	+1.5	N.D.	+1.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7	+1.6	-0.3	+1.6	N.D.	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+0.9	-0.4	+2.4	N.D.	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	+1.9	+0.0	+1.8	N.D.	+0.4