Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01510 and HMPREF1058_RS01505 are separated by 13 nucleotidesHMPREF1058_RS01505 and HMPREF1058_RS01500 are separated by 439 nucleotidesHMPREF1058_RS01500 and HMPREF1058_RS01495 are separated by 108 nucleotidesHMPREF1058_RS01495 and HMPREF1058_RS01490 are separated by 296 nucleotides HMPREF1058_RS01510: HMPREF1058_RS01510 - ABC transporter substrate-binding protein, at 105,112 to 106,269 _RS01510 HMPREF1058_RS01505: HMPREF1058_RS01505 - TonB-dependent receptor, at 106,283 to 108,460 _RS01505 HMPREF1058_RS01500: HMPREF1058_RS01500 - hypothetical protein, at 108,900 to 109,280 _RS01500 HMPREF1058_RS01495: HMPREF1058_RS01495 - TonB-dependent receptor, at 109,389 to 111,692 _RS01495 HMPREF1058_RS01490: HMPREF1058_RS01490 - methylenetetrahydrofolate reductase [NAD(P)H], at 111,989 to 112,942 _RS01490
Group Condition HMPREF1058_RS01510 HMPREF1058_RS01505 HMPREF1058_RS01500 HMPREF1058_RS01495 HMPREF1058_RS01490
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 +0.1 -0.2 +0.4 -2.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.4 +0.0 -1.2 +0.1 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 -1.1 +0.1 -0.9 +0.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.3 +0.2 -1.5 -0.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.1 +0.2 -2.0 +0.0 +0.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 +0.3 -0.7 +0.0 -1.2
carbon source D-Raffinose 20 mM (C) -0.3 -0.0 -1.7 +0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.1 -0.0 -1.5 +0.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.0 -0.0 -1.6 +0.4 -0.0
carbon source D-Galactose 20 mM (C) +0.0 +0.2 -1.5 +0.3 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.3 -0.2 -1.0 +0.4 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.5 -0.1 -1.2 +0.3 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.2 +0.2 -1.2 +0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.5 +0.5 -0.9 -0.1 +0.4
carbon source D-Mannose 20 mM (C) +0.3 +0.3 -0.7 +0.3 +0.5
carbon source D-Galacturonic Acid 20 mM (C) -0.2 -0.4 +1.4 +0.3 +0.4
carbon source Pectin from citrus peel (C) -0.1 +0.2 +1.3 +0.1 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 +0.0 +0.1 +1.9 +0.2 +0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.6 +0.2 +0.8 +0.0 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -0.0 -0.1 +1.9 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 -0.0 +0.0 +2.2 +0.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -0.3 -0.0 +2.7 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.0 -0.1 +2.7 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.2 -0.2 +4.1 +0.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 +0.1 +0.1 +3.7 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.0 -0.3 +4.4 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 +0.1 +0.0 +5.9 +0.2 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 +0.0 +0.0 +8.5 +0.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.2 +0.0 +9.1 +0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.2 -0.2 +11.0 +0.2 +0.0
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HMPREF1058_RS01510
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