Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01455 and HMPREF1058_RS01450 are separated by 24 nucleotidesHMPREF1058_RS01450 and HMPREF1058_RS01445 overlap by 35 nucleotidesHMPREF1058_RS01445 and HMPREF1058_RS21720 are separated by 709 nucleotidesHMPREF1058_RS21720 and HMPREF1058_RS0120085 are separated by 117 nucleotides HMPREF1058_RS01455: HMPREF1058_RS01455 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 121,327 to 121,842 _RS01455 HMPREF1058_RS01450: HMPREF1058_RS01450 - acetyl-CoA carboxylase biotin carboxylase subunit, at 121,867 to 123,378 _RS01450 HMPREF1058_RS01445: HMPREF1058_RS01445 - cysteine-rich CWC family protein, at 123,344 to 123,595 _RS01445 HMPREF1058_RS21720: HMPREF1058_RS21720 - ribonucleoside-triphosphate reductase, at 124,305 to 124,805 _RS21720 HMPREF1058_RS0120085: HMPREF1058_RS0120085 - IS1182 family transposase, at 124,923 to 126,578 _RS0120085
Group Condition HMPREF1058_RS01455 HMPREF1058_RS01450 HMPREF1058_RS01445 HMPREF1058_RS21720 HMPREF1058_RS0120085
carbon source D-Glucose 5 mg/ml (C) N.D. -4.6 -0.1 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 N.D. -2.9 -0.8 -0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 N.D. -4.7 +0.7 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 N.D. -4.8 +0.8 -0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 N.D. -4.1 +0.6 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -3.7 +0.6 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 N.D. -3.9 +0.7 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 N.D. -4.3 +1.3 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 N.D. -3.5 +0.9 -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 N.D. -3.1 +1.1 -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 N.D. -3.0 +0.9 -0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 N.D. -3.0 +0.9 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -3.7 +1.5 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. -3.3 +1.1 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. -2.1 +1.0 -1.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day5 N.D. -3.3 +1.0 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 N.D. -2.9 +1.0 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 N.D. -3.1 +1.4 -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 N.D. -3.1 +1.3 -0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 N.D. -3.1 +0.8 +0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -3.7 +1.7 +0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. -4.1 +1.4 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. -3.4 +1.6 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 N.D. -3.2 +1.0 +0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -2.5 +1.4 +0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 N.D. -2.2 +1.2 +1.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 N.D. -2.3 +1.5 +1.5 N.D.
carbon source NAG 2.5 mg/ml (C) N.D. +3.0 +0.8 -0.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.1 +4.1 -0.5 N.D.
carbon source NAG 2.5 mg/ml (C) N.D. +2.8 +0.8 +0.3 N.D.
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HMPREF1058_RS01455
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HMPREF1058_RS01450
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HMPREF1058_RS0120085
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