Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01275 and HMPREF1058_RS01270 are separated by 8 nucleotidesHMPREF1058_RS01270 and HMPREF1058_RS01265 are separated by 4 nucleotidesHMPREF1058_RS01265 and HMPREF1058_RS01260 are separated by 15 nucleotidesHMPREF1058_RS01260 and HMPREF1058_RS01255 are separated by 118 nucleotides HMPREF1058_RS01275: HMPREF1058_RS01275 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 166,090 to 167,127 _RS01275 HMPREF1058_RS01270: HMPREF1058_RS01270 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 167,136 to 167,645 _RS01270 HMPREF1058_RS01265: HMPREF1058_RS01265 - FHA domain-containing protein, at 167,650 to 168,174 _RS01265 HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320 _RS01260 HMPREF1058_RS01255: HMPREF1058_RS01255 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 169,439 to 170,752 _RS01255
Group Condition HMPREF1058_RS01275 HMPREF1058_RS01270 HMPREF1058_RS01265 HMPREF1058_RS01260 HMPREF1058_RS01255
carbon source D-Maltose 20 mM (C) -3.3 -4.3 -2.4 -0.3 -0.5
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -4.1 -4.2 -0.7 -0.1 -1.1
carbon source Pectic galactan from potato 5mg/ml (C) -3.3 -4.0 +0.1 -0.5 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.3 -2.0 -1.5 -1.2 -2.3
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -3.6 -3.9 +0.0 -0.3 -0.5
carbon source Arabinan from sugar beet 5mg/ml (C) -3.6 -3.7 -0.2 -0.4 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.1 -0.5 -2.9 -2.7 -1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.4 -0.3 -2.4 -1.9 -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -1.2 -1.4 -1.2 -1.2 -2.8
carbon source Dextrin from potato starch 5 mg/ml (C) -2.6 -3.9 -0.6 -0.3 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -2.9 -4.3 +0.2 -0.6 -0.2
carbon source Arabinan from sugar beet 5mg/ml (C) -3.2 -3.4 -0.3 -0.5 -0.1
carbon source Dextrin from potato starch 5 mg/ml (C) -2.9 -4.0 -0.6 -0.2 +0.3
carbon source D-Maltose 20 mM (C) -2.9 -3.0 -0.9 -0.6 +0.2
carbon source D-Raffinose 20 mM (C) -2.7 -3.3 -0.2 -0.5 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.4 -0.5 -1.9 -1.5 -2.9
carbon source L-Fucose 20 mM (C) -1.9 -4.4 +0.1 -0.4 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.9 -1.8 -0.8 -1.2 -2.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.1 -0.7 -2.3 -2.4 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -1.3 -1.0 -1.7 -0.9 -2.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -3.4 -0.4 -1.3 -0.7 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.9 -1.3 -1.2 -1.1 -2.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 -1.0 -1.7 -1.5 -0.8 -1.8
carbon source D-Maltose 20 mM (C) -2.8 -2.7 -0.5 -0.1 -0.6
carbon source D-Maltose 20 mM (C) -2.3 -3.3 -0.2 -0.3 -0.4
carbon source L-Arabinose 20 mM (C) -1.7 -2.7 -0.5 -0.5 -1.1
carbon source Pectic galactan from potato 5mg/ml (C) -3.0 -3.4 +0.5 -0.1 -0.6
carbon source (+)-Arabinogalactan 5 mg/ml (C) -1.9 -3.3 -0.8 -0.6 +0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -2.2 -3.2 +0.2 -0.4 -0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -2.1 -4.1 +0.5 -0.4 +0.1
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HMPREF1058_RS01275
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HMPREF1058_RS01270
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HMPREF1058_RS01260
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HMPREF1058_RS01255
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