Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS01130	HMPREF1058_RS0120115	HMPREF1058_RS01125	HMPREF1058_RS01120	HMPREF1058_RS01115
carbon source	D-Galactose 20 mM (C)	+0.1	N.D.	-1.5	-0.4	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	+0.5	N.D.	+0.1	-2.3	+0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	+0.3	N.D.	-1.1	-0.3	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1	+0.3	N.D.	-1.1	-0.2	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	+0.1	N.D.	-0.7	-0.4	+0.7
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.5	N.D.	+0.6	-0.6	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+0.7	N.D.	+0.0	-1.4	+0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	+0.4	N.D.	-0.7	-0.2	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	+0.4	N.D.	-0.8	+0.3	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+0.3	N.D.	-0.6	-0.2	+0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	+0.3	N.D.	-0.9	+0.4	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2	+0.5	N.D.	-1.0	+0.3	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+0.3	N.D.	-0.1	-0.6	+1.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	+0.3	N.D.	-0.8	+0.5	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	+0.4	N.D.	-0.8	+0.3	+0.9
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	N.D.	+0.3	+1.3	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+0.4	N.D.	-0.8	+0.2	+1.4
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.2	N.D.	+0.2	+1.2	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.4	N.D.	-0.7	+0.6	+0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	+0.6	N.D.	-0.4	+0.6	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+0.5	N.D.	-0.5	+0.2	+1.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	+0.5	N.D.	-0.1	+1.0	+0.5
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	+0.2	N.D.	+0.7	+0.6	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+0.4	N.D.	-0.6	+0.6	+1.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day1	+0.2	N.D.	+0.6	+0.4	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1	+0.1	N.D.	+0.6	+0.4	+0.9
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	+0.7	N.D.	+0.1	+1.4	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	+0.7	N.D.	+0.0	+1.0	+0.6
carbon source	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)	+0.6	N.D.	+0.3	+0.8	+0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	+0.6	N.D.	+0.0	+1.4	+0.6