Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS01115 and HMPREF1058_RS01110 are separated by 59 nucleotidesHMPREF1058_RS01110 and HMPREF1058_RS01105 are separated by 285 nucleotidesHMPREF1058_RS01105 and HMPREF1058_RS01100 are separated by 127 nucleotidesHMPREF1058_RS01100 and HMPREF1058_RS21550 are separated by 198 nucleotides HMPREF1058_RS01115: HMPREF1058_RS01115 - hypothetical protein, at 207,357 to 207,761 _RS01115 HMPREF1058_RS01110: HMPREF1058_RS01110 - IS256 family transposase, at 207,821 to 209,035 _RS01110 HMPREF1058_RS01105: HMPREF1058_RS01105 - hypothetical protein, at 209,321 to 209,773 _RS01105 HMPREF1058_RS01100: HMPREF1058_RS01100 - DUF4377 domain-containing protein, at 209,901 to 210,764 _RS01100 HMPREF1058_RS21550: HMPREF1058_RS21550 - hypothetical protein, at 210,963 to 211,034 _RS21550
Group Condition HMPREF1058_RS01115 HMPREF1058_RS01110 HMPREF1058_RS01105 HMPREF1058_RS01100 HMPREF1058_RS21550
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.7 -0.1 -0.1 +0.0 -3.0
carbon source Sucrose 20 mM (C) -0.4 -0.3 -0.2 -0.2 -1.2
carbon source Sucrose 20 mM (C) -0.2 +0.2 +0.1 +0.0 -2.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +1.1 +0.1 -0.4 +0.3 -2.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.7 -0.0 -0.3 +0.3 -1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.5 -0.2 -0.2 +0.4 -1.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.7 +0.2 -0.1 +0.2 -1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.4 +0.3 -0.4 +0.4 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.5 -0.1 +0.2 +0.4 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.8 -0.1 -0.3 +0.4 -1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.4 +0.3 -0.3 +0.6 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.6 +0.1 +0.2 +0.2 -1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.6 +0.4 -0.3 +0.5 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.7 -0.1 -0.3 +0.5 -0.8
carbon source Galactose 1-phosphate dipotassium salt (C) -0.7 +0.3 -0.1 -0.3 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.7 +0.1 -0.3 +0.4 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.8 +0.1 -0.2 +0.4 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.8 +0.2 +0.3 +0.1 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.6 +0.3 -0.2 +0.6 -0.8
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.5 -0.1 +0.3 -0.6 +1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.5 -0.1 -0.7 +0.9 +0.0
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) +0.9 +0.2 -0.0 +0.2 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.6 +0.2 -0.7 +0.6 -0.0
carbon source Polygalacturonic 5 mg/ml (C) -0.0 +0.1 -0.4 -0.5 +1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +1.1 +0.1 -0.2 +0.4 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.7 -0.0 -0.6 +0.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +1.4 +0.1 +0.1 +0.3 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +1.4 +0.2 +0.0 +0.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.8 +0.3 +0.0 +0.7 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 +0.9 +0.3 +0.3 +0.3 +0.6
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HMPREF1058_RS01115
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HMPREF1058_RS01100
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HMPREF1058_RS21550
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