Fitness for 4 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS00760 and HMPREF1058_RS00755 are separated by 101 nucleotidesHMPREF1058_RS00755 and HMPREF1058_RS00750 are separated by 146 nucleotidesHMPREF1058_RS00750 and HMPREF1058_RS00745 are separated by 203 nucleotides HMPREF1058_RS00760: HMPREF1058_RS00760 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 512 to 1,687 _RS00760 HMPREF1058_RS00755: HMPREF1058_RS00755 - PorT family protein, at 1,789 to 2,460 _RS00755 HMPREF1058_RS00750: HMPREF1058_RS00750 - PorT family protein, at 2,607 to 3,212 _RS00750 HMPREF1058_RS00745: HMPREF1058_RS00745 - porin family protein, at 3,416 to 3,952 _RS00745
Group Condition HMPREF1058_RS00760 HMPREF1058_RS00755 HMPREF1058_RS00750 HMPREF1058_RS00745
carbon source NAG (C) -0.6 +0.5 -0.2 +0.2
carbon source D-Galactose 20 mM (C) -0.3 -0.4 +0.5 +0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.5 +0.3 +0.0 +0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.4 +0.7 -0.1 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 +0.5 -0.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.2 +0.3 -0.4 +0.4
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +0.4 -0.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.2 +0.7 -0.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.3 +0.8 -0.1 -0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 +0.1 -0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 +0.1 +0.7 -0.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.9 +0.3 -0.3 -0.1
carbon source D-Glucose 5 mg/ml (C) +0.2 +0.4 -0.1 +0.3
carbon source Dextran 5 mg/ml (C) +0.5 +0.0 +0.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.2 +0.7 +0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.4 +0.3 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +0.3 +0.7 +0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.3 +0.8 -0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 +0.4 +0.7 -0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.3 +0.9 +0.1 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.5 +0.4 +0.4 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.1 +0.9 +0.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.3 +0.7 +0.4 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.0 +0.7 +0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.3 +0.7 +0.0 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.3 +1.0 -0.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.6 +1.0 -0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.3 +0.8 +0.5 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.6 +1.0 +0.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.7 +1.3 -0.1 +0.3
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HMPREF1058_RS00760
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