Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS00705 and HMPREF1058_RS00700 are separated by 36 nucleotidesHMPREF1058_RS00700 and HMPREF1058_RS00695 are separated by 81 nucleotidesHMPREF1058_RS00695 and HMPREF1058_RS00690 are separated by 173 nucleotidesHMPREF1058_RS00690 and HMPREF1058_RS00685 are separated by 80 nucleotides HMPREF1058_RS00705: HMPREF1058_RS00705 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 9,029 to 10,564 _RS00705 HMPREF1058_RS00700: HMPREF1058_RS00700 - DUF4831 family protein, at 10,601 to 11,650 _RS00700 HMPREF1058_RS00695: HMPREF1058_RS00695 - MFS transporter, at 11,732 to 13,120 _RS00695 HMPREF1058_RS00690: HMPREF1058_RS00690 - DUF3332 domain-containing protein, at 13,294 to 13,845 _RS00690 HMPREF1058_RS00685: HMPREF1058_RS00685 - DUF4934 domain-containing protein, at 13,926 to 15,158 _RS00685
Group Condition HMPREF1058_RS00705 HMPREF1058_RS00700 HMPREF1058_RS00695 HMPREF1058_RS00690 HMPREF1058_RS00685
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.6 -6.4 +0.1 -0.2 +0.3
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.5 -6.7 +0.2 +0.0 +0.4
carbon source Arabinan from sugar beet 5mg/ml (C) +0.5 -5.8 +0.0 -0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.2 -5.6 -0.2 -0.1 +0.7
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.1 -5.6 +0.0 -0.1 +0.3
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.2 -5.6 -0.1 +0.0 +0.2
carbon source D-Galactose 20 mM (C) -0.0 -5.3 +0.5 -0.6 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.2 -5.5 -0.2 +0.0 +0.8
carbon source Beta-Lactose 20 mM (C) -0.0 -5.1 +0.0 -0.0 +0.1
carbon source Arabinan from sugar beet 5mg/ml (C) +0.3 -5.4 -0.0 +0.1 +0.1
carbon source a-Cyclodextrin (C) +0.0 -5.0 +0.3 -0.1 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +1.5 -5.9 +0.1 -0.5 +0.1
carbon source D-Galactose 20 mM (C) +0.1 -5.1 +0.5 -0.3 -0.0
carbon source D-Galactose (C) +0.1 -5.2 +0.1 +0.3 +0.0
carbon source D-Galactose 20 mM (C) +0.3 -4.7 +0.2 -0.0 -0.3
carbon source D-Fructose 20 mM (C) +0.2 -5.1 +0.1 -0.0 +0.3
carbon source D-Maltose 20 mM (C) +0.5 -5.1 +0.3 -0.0 +0.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 -4.8 +0.4 -0.0 -0.1
carbon source Pectic galactan from potato 5mg/ml (C) +0.1 -4.7 -0.1 +0.3 +0.3
carbon source D-Maltose 20 mM (C) +0.5 -4.6 +0.4 -0.4 +0.1
carbon source Dextrin from potato starch 5 mg/ml (C) +0.2 -4.6 +0.2 +0.0 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.3 -4.7 +0.2 +0.4 +0.6
carbon source D-Fructose 20 mM (C) +0.2 -4.5 +0.2 +0.2 +0.2
carbon source Dextrin from potato starch 5 mg/ml (C) +0.5 -4.2 +0.0 -0.3 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.2 -4.6 +0.2 +0.9 +0.6
carbon source D-Glucose 5 mg/ml (C) +0.4 -4.1 +0.5 +0.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.5 -4.0 -0.2 +0.1 +0.7
carbon source D-Glucose (C) +0.2 -4.2 +0.7 +0.1 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.5 -3.5 +0.2 -0.5 +0.6
carbon source NAG 2.5 mg/ml (C) +0.2 +4.3 -0.1 -0.7 -0.1
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