Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS00410 and HMPREF1058_RS00405 are separated by 162 nucleotidesHMPREF1058_RS00405 and HMPREF1058_RS00400 are separated by 97 nucleotidesHMPREF1058_RS00400 and HMPREF1058_RS00395 overlap by 4 nucleotidesHMPREF1058_RS00395 and HMPREF1058_RS00390 are separated by 14 nucleotides HMPREF1058_RS00410: HMPREF1058_RS00410 - MATE family efflux transporter, at 78,492 to 79,841 _RS00410 HMPREF1058_RS00405: HMPREF1058_RS00405 - M28 family peptidase, at 80,004 to 81,497 _RS00405 HMPREF1058_RS00400: HMPREF1058_RS00400 - GntR family transcriptional regulator, at 81,595 to 81,960 _RS00400 HMPREF1058_RS00395: HMPREF1058_RS00395 - hypothetical protein, at 81,957 to 82,850 _RS00395 HMPREF1058_RS00390: HMPREF1058_RS00390 - ATP-binding cassette domain-containing protein, at 82,865 to 83,707 _RS00390
Group Condition HMPREF1058_RS00410 HMPREF1058_RS00405 HMPREF1058_RS00400 HMPREF1058_RS00395 HMPREF1058_RS00390
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.0 +0.1 -2.7 -0.1 +0.4
carbon source ISOT LC742-071714 10 mg/mL (C) -0.1 -0.0 -1.3 -0.3 -0.2
carbon source Polygalacturonic 5 mg/ml (C) -0.2 -0.0 -1.3 +0.1 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.7 -0.0 -0.9 -0.5 +0.4
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.2 -0.1 -1.2 -0.1 -0.5
carbon source Polygalacturonic 5 mg/ml (C) -0.0 +0.1 -1.9 +0.3 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.0 +0.0 -1.7 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.6 +0.0 -0.8 -0.3 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.0 +0.0 -1.5 +0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.2 -0.1 -1.2 -0.1 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -0.2 -0.1 -1.1 -0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.6 -0.1 -0.8 -0.4 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.3 +0.0 -0.9 -0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.2 -0.1 -1.1 -0.3 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.6 +0.1 -0.6 -0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.5 -0.0 -0.7 -0.2 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.2 +0.1 -1.4 +0.0 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.1 +0.1 -0.8 -0.2 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.2 +0.1 -0.7 -0.3 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.5 +0.1 -0.8 -0.2 +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.2 +0.1 -0.9 +0.1 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.5 +0.1 -1.0 -0.0 +1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -0.5 +0.0 -0.5 -0.0 +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.4 -0.1 -0.2 -0.2 +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.5 +0.1 -0.2 -0.1 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -0.3 -0.0 +0.2 -0.2 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.4 +0.0 -0.1 -0.1 +1.4
carbon source NAG (C) -0.3 +0.0 +0.9 +0.2 +0.5
carbon source Pectin from citrus peel (C) +0.1 +0.0 +1.0 -0.1 +0.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 -0.1 +1.8 +0.0 +0.1
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