Fitness for 4 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06581 and H281DRAFT_06582 are separated by 111 nucleotidesH281DRAFT_06582 and H281DRAFT_06583 are separated by 125 nucleotidesH281DRAFT_06583 and H281DRAFT_06584 are separated by 333 nucleotides H281DRAFT_06581: H281DRAFT_06581 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 22,744 to 23,475 _06581 H281DRAFT_06582: H281DRAFT_06582 - Predicted arabinose efflux permease, MFS family, at 23,587 to 24,831 _06582 H281DRAFT_06583: H281DRAFT_06583 - 2-haloacid dehalogenase, at 24,957 to 25,688 _06583 H281DRAFT_06584: H281DRAFT_06584 - Transposase DDE domain-containing protein, at 26,022 to 26,726 _06584
Group Condition H281DRAFT_06581 H281DRAFT_06582 H281DRAFT_06583 H281DRAFT_06584
phage Bu1_10 -0.5 -0.4 -0.8 N.D.
phage Bu1_100 -0.7 -0.1 -0.6 N.D.
carbon source D-Glucose (C) -0.5 +0.1 -0.8 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.9 -0.2 -0.0 N.D.
carbon source D-Galactose (C) -0.7 +0.2 -0.6 N.D.
carbon source D-Glucose (C) -0.5 +0.0 -0.6 N.D.
carbon source D-Glucose (C) -0.6 +0.1 -0.3 N.D.
carbon source Protocatechuic Acid (C) -0.4 +0.1 -0.5 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.7 +0.4 -0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 -0.5 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 +0.2 -0.3 N.D.
carbon source Glycerol (C) -1.2 -0.0 +0.6 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 +0.2 -0.7 N.D.
carbon source D-Galactose (C) -0.8 +0.3 +0.1 N.D.
carbon source Glycerol (C) -0.8 +0.1 +0.3 N.D.
carbon source Phenylacetic (C) -0.6 -0.1 +0.4 N.D.
carbon source Hydroxy-L-Proline (C) -0.4 -0.2 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.2 +0.6 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 -0.2 +0.9 N.D.
carbon source propionate (C) +0.6 -0.1 -0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.8 +0.8 +0.2 N.D.
carbon source Protocatechuic Acid (C) +0.9 +0.1 -0.5 N.D.
carbon source Malonic (C) +0.4 +0.5 -0.1 N.D.
carbon source Protocatechuic Acid (C) +0.7 -0.1 +0.4 N.D.
carbon source Malonic (C) +0.8 +0.4 -0.1 N.D.
carbon source adipate (C) +0.7 -0.2 +0.7 N.D.
carbon source butyrate (C) +1.0 +0.1 +0.1 N.D.
carbon source Dodecandioic (C) +0.7 +0.3 +0.4 N.D.
carbon source adipate (C) +1.3 -0.2 +0.3 N.D.
carbon source Hexanoic (C) +0.7 +0.4 +0.5 N.D.
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