Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06559 and H281DRAFT_06560 are separated by 85 nucleotidesH281DRAFT_06560 and H281DRAFT_06561 overlap by 10 nucleotidesH281DRAFT_06561 and H281DRAFT_06562 are separated by 90 nucleotidesH281DRAFT_06562 and H281DRAFT_06563 are separated by 236 nucleotides H281DRAFT_06559: H281DRAFT_06559 - hypothetical protein, at 1,586 to 1,891 _06559 H281DRAFT_06560: H281DRAFT_06560 - hypothetical protein, at 1,977 to 2,675 _06560 H281DRAFT_06561: H281DRAFT_06561 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,666 to 3,037 _06561 H281DRAFT_06562: H281DRAFT_06562 - hypothetical protein, at 3,128 to 3,346 _06562 H281DRAFT_06563: H281DRAFT_06563 - hypothetical protein, at 3,583 to 3,846 _06563
Group Condition H281DRAFT_06559 H281DRAFT_06560 H281DRAFT_06561 H281DRAFT_06562 H281DRAFT_06563
carbon source adipate (C) N.D. -3.6 -0.2 -0.3 +0.3
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. -0.5 -0.0 -1.2 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.2 +0.7 -1.7 -0.8
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.8 -0.1 -1.1 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.1 +0.1 -1.5 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.7 +0.3 -0.9 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.4 +0.4 -1.2 -0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.6 +0.1 -0.8 -0.3
carbon source p-Coumaric (C) N.D. -0.2 -0.1 -1.2 -0.2
carbon source Azelaic (C) N.D. -0.1 +0.2 -1.4 -0.3
carbon source Gallic Acid (C) N.D. -0.6 -0.4 -0.6 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -0.3 +0.3 -1.2 -0.2
carbon source 2'-Deoxyinosine 10 mM (C) N.D. +0.1 +0.3 -0.8 -0.8
carbon source propionate (C) N.D. -0.6 +0.0 +0.2 -0.8
carbon source succinate (C) N.D. -0.5 +0.1 -0.9 +0.3
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.0 +0.3 -1.1 -0.2
carbon source Malonic (C) N.D. +0.2 -0.0 -1.2 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.6 +0.5 -0.6 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.5 +0.1 -1.1 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.5 +0.4 -0.8 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.4 -0.2 -0.6 +0.8
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. +0.4 +0.3 -1.0 -0.0
carbon source Hydroxy-L-Proline (C) N.D. -0.1 -0.2 +0.9 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.4 -0.9 +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. +1.0 -0.1 +0.1 -0.4
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.3 +0.5 -0.7 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +0.5 -0.3 +0.6
carbon source Glycerol (C) N.D. -0.1 -0.1 +0.8 +0.6
phage Bu1_100 N.D. +0.7 +0.3 +1.0 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +1.8 -0.0 +0.4 +0.0
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