Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06542 and H281DRAFT_06543 are separated by 10 nucleotidesH281DRAFT_06543 and H281DRAFT_06544 overlap by 4 nucleotidesH281DRAFT_06544 and H281DRAFT_06545 are separated by 118 nucleotidesH281DRAFT_06545 and H281DRAFT_06546 are separated by 259 nucleotides H281DRAFT_06542: H281DRAFT_06542 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 27,345 to 29,825 _06542 H281DRAFT_06543: H281DRAFT_06543 - cytochrome b561, at 29,836 to 30,375 _06543 H281DRAFT_06544: H281DRAFT_06544 - catalase, at 30,372 to 31,466 _06544 H281DRAFT_06545: H281DRAFT_06545 - protein of unknown function (DUF4148), at 31,585 to 31,851 _06545 H281DRAFT_06546: H281DRAFT_06546 - hypothetical protein, at 32,111 to 32,842 _06546
Group Condition H281DRAFT_06542 H281DRAFT_06543 H281DRAFT_06544 H281DRAFT_06545 H281DRAFT_06546
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.4 +0.0 +0.2 -7.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.5 +0.2 -0.2 -7.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.4 +0.2 -0.2 -7.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.1 +0.4 +0.1 -7.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.2 +0.0 -0.3 -5.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.5 +0.0 -0.4 -5.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.3 +0.0 +0.1 -5.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.2 +0.3 -0.5 -4.5
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.1 +0.1 +0.0 -4.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.2 +0.7 -0.4 -4.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.3 +0.2 +0.0 -3.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.2 +0.1 -0.2 -3.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.1 +0.2 -0.5 -2.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 -0.3 +0.1 -0.2 -2.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 -0.6 -0.1 -0.5 -1.7
carbon source Hexanoic (C) -0.2 -0.6 -0.1 -0.2 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 -0.3 -0.7 +0.5 -1.1
carbon source Malonic (C) +0.1 +0.0 +0.1 -0.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.6 +0.3 +0.3 -1.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 +0.2 -0.7 +0.3 -1.1
carbon source Malonic (C) +0.1 +0.1 +0.0 +0.1 -1.4
carbon source Dodecandioic (C) +0.1 -0.3 -0.1 +0.4 -0.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.3 -0.7 +0.4 -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 -0.7 +0.5 +0.2 -0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 +0.5 -0.4 +0.5 -0.3
carbon source Sebacic (C) -0.2 +0.0 -0.6 +0.0 +1.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.2 +0.6 +0.6 -1.1 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.3 -0.1 +0.6 +0.4 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 -0.7 +0.4 +0.3 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.4 -0.3 +0.6 +0.3 +0.2
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