Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotidesH281DRAFT_06524 and H281DRAFT_06525 are separated by 6 nucleotidesH281DRAFT_06525 and H281DRAFT_06527 are separated by 925 nucleotidesH281DRAFT_06527 and H281DRAFT_06528 overlap by 4 nucleotides H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310 _06523 H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122 _06524 H281DRAFT_06525: H281DRAFT_06525 - cobalamin biosynthesis protein CobW, at 7,129 to 8,310 _06525 H281DRAFT_06527: H281DRAFT_06527 - uroporphyrin-III C-methyltransferase, at 9,236 to 10,003 _06527 H281DRAFT_06528: H281DRAFT_06528 - cobalt-precorrin 5A hydrolase, at 10,000 to 10,422 _06528
Group Condition H281DRAFT_06523 H281DRAFT_06524 H281DRAFT_06525 H281DRAFT_06527 H281DRAFT_06528
carbon source D-Glucose (C) -2.8 -3.1 -5.8 -0.4 -0.9
carbon source succinate (C) -4.1 -3.4 -2.8 -0.2 -1.6
carbon source Protocatechuic Acid (C) -2.6 -2.9 -3.0 -0.9 -0.1
carbon source succinate (C) -3.2 -2.9 -2.5 -0.1 -0.3
carbon source Protocatechuic Acid (C) -2.5 -1.5 -2.8 -0.6 -0.4
carbon source acetate (C) -1.8 -1.8 -3.2 -0.0 -0.1
carbon source acetate (C) -2.2 -2.2 -2.3 +0.4 -0.1
carbon source Dodecandioic (C) -2.0 -2.1 -1.9 +0.1 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -2.4 -2.0 -1.4 -0.6 +0.0
carbon source Malonic (C) -2.0 -1.8 -2.1 +0.1 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -1.9 -1.4 -0.9 -0.2 -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -2.3 -1.6 -0.9 -0.2 +0.0
carbon source Malonic (C) -1.8 -1.2 -2.2 +0.0 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -1.7 -1.4 -1.1 -0.6 +0.1
carbon source butyrate (C) -1.1 -0.8 -2.1 +0.0 +0.0
carbon source butyrate (C) -1.6 -0.9 -1.3 -0.1 -0.0
carbon source Valeric (C) -1.8 -1.0 -1.4 +0.0 +0.4
carbon source propionate (C) -1.0 -1.5 -0.9 +0.0 +0.0
carbon source Sebacic (C) -1.3 -1.2 -0.8 +0.0 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.4 -1.3 -0.8 -0.0 +0.5
carbon source propionate (C) -1.1 -0.9 -1.1 +0.1 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.3 -1.0 -0.8 -0.2 +0.4
carbon source adipate (C) -1.0 -0.7 -0.9 +0.1 -0.5
carbon source Valeric (C) -1.1 -0.5 -0.9 -0.1 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.9 -0.7 -0.6 -0.3 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.0 +0.1 -1.2 +0.1 -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.0 -0.7 -0.5 -0.3 +0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.2 -0.3 +0.4 -0.5 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 +0.1 +0.3 -0.3 +1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.0 +0.3 +0.3 +1.5
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