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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia bryophila 376MFSha3.1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
H281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotides
H281DRAFT_06524 and H281DRAFT_06525 are separated by 6 nucleotides
H281DRAFT_06525 and H281DRAFT_06527 are separated by 925 nucleotides
H281DRAFT_06527 and H281DRAFT_06528 overlap by 4 nucleotides
H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310
_06523
H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122
_06524
H281DRAFT_06525: H281DRAFT_06525 - cobalamin biosynthesis protein CobW, at 7,129 to 8,310
_06525
H281DRAFT_06527: H281DRAFT_06527 - uroporphyrin-III C-methyltransferase, at 9,236 to 10,003
_06527
H281DRAFT_06528: H281DRAFT_06528 - cobalt-precorrin 5A hydrolase, at 10,000 to 10,422
_06528
Group
Condition
H281DRAFT
_06523
H281DRAFT
_06524
H281DRAFT
_06525
H281DRAFT
_06527
H281DRAFT
_06528
carbon source
D-Glucose (C)
-2.8
-3.1
-5.8
-0.4
-0.9
carbon source
succinate (C)
-4.1
-3.4
-2.8
-0.2
-1.6
carbon source
Protocatechuic Acid (C)
-2.6
-2.9
-3.0
-0.9
-0.1
carbon source
succinate (C)
-3.2
-2.9
-2.5
-0.1
-0.3
carbon source
Protocatechuic Acid (C)
-2.5
-1.5
-2.8
-0.6
-0.4
carbon source
acetate (C)
-1.8
-1.8
-3.2
-0.0
-0.1
carbon source
acetate (C)
-2.2
-2.2
-2.3
+0.4
-0.1
carbon source
Dodecandioic (C)
-2.0
-2.1
-1.9
+0.1
-0.5
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
-2.4
-2.0
-1.4
-0.6
+0.0
carbon source
Malonic (C)
-2.0
-1.8
-2.1
+0.1
-0.2
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
-1.9
-1.4
-0.9
-0.2
-0.7
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
-2.3
-1.6
-0.9
-0.2
+0.0
carbon source
Malonic (C)
-1.8
-1.2
-2.2
+0.0
+0.1
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
-1.7
-1.4
-1.1
-0.6
+0.1
carbon source
butyrate (C)
-1.1
-0.8
-2.1
+0.0
+0.0
carbon source
butyrate (C)
-1.6
-0.9
-1.3
-0.1
-0.0
carbon source
Valeric (C)
-1.8
-1.0
-1.4
+0.0
+0.4
carbon source
propionate (C)
-1.0
-1.5
-0.9
+0.0
+0.0
carbon source
Sebacic (C)
-1.3
-1.2
-0.8
+0.0
+0.2
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-1.4
-1.3
-0.8
-0.0
+0.5
carbon source
propionate (C)
-1.1
-0.9
-1.1
+0.1
+0.2
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-1.3
-1.0
-0.8
-0.2
+0.4
carbon source
adipate (C)
-1.0
-0.7
-0.9
+0.1
-0.5
carbon source
Valeric (C)
-1.1
-0.5
-0.9
-0.1
+0.1
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
-0.9
-0.7
-0.6
-0.3
+0.2
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
+0.0
+0.1
-1.2
+0.1
-0.9
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-1.0
-0.7
-0.5
-0.3
+0.5
supernatant
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-1.2
-0.3
+0.4
-0.5
+0.3
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
-0.4
+0.1
+0.3
-0.3
+1.3
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.5
+0.0
+0.3
+0.3
+1.5
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