Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06482 and H281DRAFT_06483 overlap by 17 nucleotidesH281DRAFT_06483 and H281DRAFT_06484 are separated by 279 nucleotidesH281DRAFT_06484 and H281DRAFT_06485 are separated by 336 nucleotidesH281DRAFT_06485 and H281DRAFT_06486 are separated by 130 nucleotides H281DRAFT_06482: H281DRAFT_06482 - succinylarginine dihydrolase, at 19,748 to 21,088 _06482 H281DRAFT_06483: H281DRAFT_06483 - succinylglutamate desuccinylase, at 21,072 to 22,124 _06483 H281DRAFT_06484: H281DRAFT_06484 - amino acid ABC transporter substrate-binding protein, PAAT family, at 22,404 to 23,204 _06484 H281DRAFT_06485: H281DRAFT_06485 - c-di-GMP-related signal transduction protein, contains EAL and HDOD domains, at 23,541 to 24,920 _06485 H281DRAFT_06486: H281DRAFT_06486 - Predicted signal transduction protein, at 25,051 to 26,508 _06486
Group Condition H281DRAFT_06482 H281DRAFT_06483 H281DRAFT_06484 H281DRAFT_06485 H281DRAFT_06486
carbon source adipate (C) N.D. -2.8 -0.4 +0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -3.0 +0.4 -0.4 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.7 -0.9 -0.5 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.3 -0.2 -1.0 -0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -1.5 -0.1 -0.4 -0.1
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -1.2 -0.6 -0.1 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.7 -0.1 -0.0 -0.2
carbon source butyrate (C) N.D. -0.0 -1.6 +0.0 -0.3
carbon source Hexanoic (C) N.D. -1.3 +0.0 -0.3 -0.1
carbon source Valeric (C) N.D. -0.1 -1.1 -0.1 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.6 -1.3 -0.6 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.7 -0.2 -0.3 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -0.5 -0.7 -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.6 -0.6 -0.3 +0.1
carbon source succinate (C) N.D. -0.9 -0.4 -0.1 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -1.1 +0.2 -0.1 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.1 -0.3 -0.9 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.0 -0.3 -0.0 +0.5
phage Bu1_10 N.D. +0.6 -0.9 -0.3 -0.1
carbon source butyrate (C) N.D. -0.4 +0.6 -0.6 -0.3
carbon source Dodecandioic (C) N.D. -0.8 +0.7 -0.2 -0.2
carbon source Sebacic (C) N.D. +0.2 -0.6 +0.3 -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. +0.6 -0.3 -0.3 -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. +1.0 -0.4 -0.4 -0.4
carbon source D-Glucose (C) N.D. +1.1 -0.4 -0.1 -0.1
phage Bu1_100 N.D. -0.6 +1.0 +0.4 -0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. +0.8 +0.5 -0.3 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. +1.1 -0.3 +0.3 -0.1
carbon source D-Glucose (C) N.D. +1.1 +0.4 -0.1 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. +0.6 +0.7 +0.4 -0.1
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