Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06473 and H281DRAFT_06474 are separated by 331 nucleotidesH281DRAFT_06474 and H281DRAFT_06475 are separated by 4 nucleotidesH281DRAFT_06475 and H281DRAFT_06476 are separated by 78 nucleotidesH281DRAFT_06476 and H281DRAFT_06477 are separated by 54 nucleotides H281DRAFT_06473: H281DRAFT_06473 - NTE family protein, at 10,048 to 11,001 _06473 H281DRAFT_06474: H281DRAFT_06474 - amino acid ABC transporter membrane protein 1, PAAT family, at 11,333 to 12,022 _06474 H281DRAFT_06475: H281DRAFT_06475 - amino acid ABC transporter membrane protein 2, PAAT family, at 12,027 to 12,740 _06475 H281DRAFT_06476: H281DRAFT_06476 - amino acid ABC transporter ATP-binding protein, PAAT family, at 12,819 to 13,610 _06476 H281DRAFT_06477: H281DRAFT_06477 - transcriptional regulator, AraC family, at 13,665 to 14,684 _06477
Group Condition H281DRAFT_06473 H281DRAFT_06474 H281DRAFT_06475 H281DRAFT_06476 H281DRAFT_06477
carbon source 4-Hydroxybenzoic Acid (C) -5.1 +0.2 +0.2 N.D. -0.4
lb LB -0.8 -0.8 -0.1 N.D. -1.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.1 -1.1 -0.1 N.D. +0.3
phage Bu1_100 -0.2 -1.3 +0.0 N.D. -0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 -0.8 -0.1 N.D. -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 -0.2 +0.1 N.D. -1.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.6 -0.3 -0.6 N.D. -1.2
carbon source 2-Deoxy-D-Ribose (C) +0.0 -1.3 +0.2 N.D. -0.2
carbon source Azelaic (C) -1.0 +0.4 +0.0 N.D. -0.7
carbon source Malonic (C) +0.5 -0.5 -0.2 N.D. -0.8
carbon source Valeric (C) +0.6 -0.7 -0.1 N.D. -0.7
carbon source Phenylacetic (C) -0.9 +0.7 -0.5 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.7 -0.7 -0.0 N.D. -0.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.0 +0.8 -0.2 N.D. -0.0
phage Bu1_100 -0.2 +0.3 -0.8 N.D. +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.9 +0.7 -0.1 N.D. +0.1
carbon source D-Glucose 20 mM (C) -0.7 +0.3 -0.2 N.D. +0.5
carbon source 2-Deoxy-D-Ribose (C) +0.6 -0.4 +0.2 N.D. -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.0 +0.8 -0.4 N.D. +0.6
carbon source D,L-Lactate (C) +0.8 +0.1 +0.0 N.D. -1.0
carbon source succinate (C) -0.8 +0.4 +0.1 N.D. +0.6
carbon source 2-Deoxy-D-Ribose 20 mM (C) -1.0 +0.6 -0.2 N.D. +0.9
carbon source 2'-Deoxyinosine 10 mM (C) -0.5 +0.6 -0.4 N.D. +0.6
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 +1.0 +0.1 N.D. -0.4
carbon source Hexanoic (C) +0.6 +0.6 +0.0 N.D. -0.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 +0.9 -0.1 N.D. +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.9 +1.2 -0.1 N.D. +0.8
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 +0.5 -0.2 N.D. +1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 +0.3 -0.3 N.D. +0.8
carbon source D-Glucose 20 mM (C) -0.3 +1.2 -0.0 N.D. +0.5
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