Fitness for 4 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06461 and H281DRAFT_06462 are separated by 37 nucleotidesH281DRAFT_06462 and H281DRAFT_06463 overlap by 7 nucleotidesH281DRAFT_06463 and H281DRAFT_06464 are separated by 101 nucleotides H281DRAFT_06461: H281DRAFT_06461 - hypothetical protein, at 70,271 to 70,558 _06461 H281DRAFT_06462: H281DRAFT_06462 - hypothetical protein, at 70,596 to 70,919 _06462 H281DRAFT_06463: H281DRAFT_06463 - transposase, IS4 family, at 70,913 to 72,034 _06463 H281DRAFT_06464: H281DRAFT_06464 - hypothetical protein, at 72,136 to 72,228 _06464
Group Condition H281DRAFT_06461 H281DRAFT_06462 H281DRAFT_06463 H281DRAFT_06464
carbon source Hexanoic (C) +0.1 -4.4 +0.4 +0.3
phage Bu1_100 -0.1 -1.4 -0.5 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 -1.3 -0.2 -0.1
carbon source Hydroxy-L-Proline (C) -0.2 -1.2 +0.3 -0.0
carbon source Hydroxy-L-Proline (C) -0.1 -1.1 +0.2 +0.1
carbon source 3-Hydroxypropionate (C) -0.0 -1.0 +0.1 +0.1
carbon source propionate (C) -0.1 -1.2 +0.1 +0.4
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.0 -0.8 +0.4 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -1.3 +0.5 +0.1
carbon source Azelaic (C) -0.0 -0.8 +0.4 -0.1
carbon source Malonic (C) +0.2 -0.7 +0.3 -0.1
carbon source 3-hydroxybutyric (C) +0.2 -0.7 +0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.5 -0.2 +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 -0.4 +0.4 -0.2
carbon source Sebacic (C) +0.0 +0.9 -0.1 -0.3
carbon source 2-Deoxy-D-Ribose (C) +0.0 +0.8 -0.3 +0.1
carbon source Gallic Acid (C) -0.2 +0.7 +0.2 +0.0
carbon source Protocatechuic Acid (C) -0.1 +1.0 -0.1 +0.0
carbon source D,L-Lactate (C) +0.0 +0.9 -0.2 +0.1
carbon source succinate (C) -0.1 +1.0 +0.1 +0.1
carbon source Gallic Acid (C) -0.0 +0.9 +0.1 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 +0.7 -0.1 +0.3
carbon source 2-Deoxy-D-Ribose (C) -0.1 +1.0 +0.1 +0.1
carbon source propionate (C) +0.1 +0.9 +0.2 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.7 -0.1 +0.4
carbon source adipate (C) +0.1 +1.0 -0.2 +0.4
carbon source Malonic (C) +0.1 +0.9 +0.2 +0.1
carbon source butyrate (C) +0.1 +1.4 -0.3 +0.2
carbon source D-Glucose (C) +0.0 +1.1 +0.2 +0.2
carbon source adipate (C) +0.0 +1.6 +0.4 -0.1
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