Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06422 and H281DRAFT_06423 are separated by 66 nucleotidesH281DRAFT_06423 and H281DRAFT_06424 are separated by 54 nucleotidesH281DRAFT_06424 and H281DRAFT_06425 are separated by 729 nucleotidesH281DRAFT_06425 and H281DRAFT_06426 are separated by 333 nucleotides H281DRAFT_06422: H281DRAFT_06422 - hypothetical protein, at 23,769 to 24,071 _06422 H281DRAFT_06423: H281DRAFT_06423 - hypothetical protein, at 24,138 to 24,344 _06423 H281DRAFT_06424: H281DRAFT_06424 - transcriptional regulator, LysR family, at 24,399 to 25,376 _06424 H281DRAFT_06425: H281DRAFT_06425 - Predicted membrane protein, at 26,106 to 26,495 _06425 H281DRAFT_06426: H281DRAFT_06426 - ATP-dependent Lon protease, at 26,829 to 29,207 _06426
Group Condition H281DRAFT_06422 H281DRAFT_06423 H281DRAFT_06424 H281DRAFT_06425 H281DRAFT_06426
carbon source Valeric (C) -1.4 N.D. -0.0 N.D. -0.0
carbon source adipate (C) -0.5 N.D. -0.3 N.D. -0.2
carbon source p-Coumaric (C) -0.9 N.D. -0.0 N.D. +0.0
carbon source Glycerol (C) -0.4 N.D. -0.3 N.D. -0.1
carbon source Protocatechuic Acid (C) -0.7 N.D. -0.0 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. +0.1 N.D. +0.1
carbon source Gallic Acid (C) -0.5 N.D. -0.1 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.5 N.D. +0.2 N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 N.D. +0.3 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 N.D. +0.4 N.D. -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.4 N.D. +0.3 N.D. -0.0
carbon source D-Glucose 20 mM (C) -0.4 N.D. +0.3 N.D. +0.2
carbon source Malonic (C) +0.7 N.D. +0.2 N.D. -0.4
carbon source propionate (C) +0.8 N.D. +0.0 N.D. -0.2
carbon source acetate (C) +0.9 N.D. -0.0 N.D. -0.2
carbon source D,L-Lactate (C) +0.6 N.D. +0.1 N.D. -0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.1 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 N.D. +0.5 N.D. -0.0
carbon source D-Glucose (C) +0.6 N.D. +0.1 N.D. +0.0
control NoPhageControl +0.5 N.D. +0.2 N.D. +0.1
carbon source D-Glucose 20 mM (C) +0.7 N.D. -0.0 N.D. +0.1
carbon source Protocatechuic Acid (C) +0.8 N.D. +0.1 N.D. +0.0
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 N.D. +0.2 N.D. +0.3
carbon source Hexanoic (C) +1.3 N.D. -0.3 N.D. -0.0
carbon source Hydroxy-L-Proline (C) +0.8 N.D. +0.2 N.D. +0.0
carbon source adipate (C) +0.8 N.D. -0.1 N.D. +0.2
carbon source Protocatechuic Acid (C) +0.9 N.D. -0.0 N.D. +0.2
phage Bu1_100 +1.5 N.D. -0.3 N.D. +0.1
phage Bu1_100 +1.1 N.D. +0.4 N.D. +0.0
phage Bu1_10 +1.0 N.D. +0.4 N.D. +0.4
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