Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06411 and H281DRAFT_06412 are separated by 375 nucleotidesH281DRAFT_06412 and H281DRAFT_06413 overlap by 29 nucleotidesH281DRAFT_06413 and H281DRAFT_06414 overlap by 4 nucleotidesH281DRAFT_06414 and H281DRAFT_06415 are separated by 890 nucleotides H281DRAFT_06411: H281DRAFT_06411 - hypothetical protein, at 9,323 to 10,294 _06411 H281DRAFT_06412: H281DRAFT_06412 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 10,670 to 12,133 _06412 H281DRAFT_06413: H281DRAFT_06413 - adenylyl-sulfate kinase, at 12,105 to 13,370 _06413 H281DRAFT_06414: H281DRAFT_06414 - EamA domain-containing membrane protein RarD, at 13,367 to 14,239 _06414 H281DRAFT_06415: H281DRAFT_06415 - hypothetical protein, at 15,130 to 15,894 _06415
Group Condition H281DRAFT_06411 H281DRAFT_06412 H281DRAFT_06413 H281DRAFT_06414 H281DRAFT_06415
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.2 +0.2 -1.7 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.2 -0.4 -1.5 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.0 -0.0 -1.1 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.0 -0.0 -1.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.0 -0.1 -1.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.1 +0.1 -1.1 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.1 -0.2 -1.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.1 -0.0 -0.8 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.3 +0.1 -1.0 +0.5
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 -0.0 -1.0 +0.0
carbon source 3-Hydroxypropionate (C) -0.1 -0.0 -0.1 +0.2 -0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 -0.0 -0.6 -0.0
carbon source Malonic (C) +0.0 +0.1 +0.0 -0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.2 +0.0 -0.7 +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +0.1 -0.0 -0.6 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.2 +0.0 -0.8 +0.2
carbon source Protocatechuic Acid (C) -0.0 +0.1 -0.1 +0.1 -0.4
carbon source Phenylacetic (C) -0.1 +0.1 +0.2 -0.1 -0.2
carbon source Malonic (C) -0.3 -0.1 -0.0 -0.2 +0.4
carbon source Malonic (C) +0.2 +0.1 +0.1 -0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.2 +0.0 -0.4 +0.3
carbon source Suberic (C) -0.0 +0.1 -0.1 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 +0.2 -0.1 -0.1 +0.1
carbon source Protocatechuic Acid (C) -0.1 +0.1 +0.3 -0.0 +0.3
carbon source acetate (C) +0.1 +0.2 +0.1 -0.0 +0.4
phage Bu1_10 +0.3 +0.2 +0.1 +0.1 +0.1
carbon source butyrate (C) +0.1 +0.1 +0.0 -0.0 +0.8
carbon source Valeric (C) +0.1 +0.1 -0.0 +0.1 +0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.7 +0.5 +0.6 +0.4 -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.8 +0.5 +0.6 +0.5 -0.1
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