Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06392 and H281DRAFT_06393 overlap by 4 nucleotidesH281DRAFT_06393 and H281DRAFT_06394 are separated by 32 nucleotidesH281DRAFT_06394 and H281DRAFT_06395 overlap by 4 nucleotidesH281DRAFT_06395 and H281DRAFT_06396 overlap by 4 nucleotides H281DRAFT_06392: H281DRAFT_06392 - Microcystin degradation protein MlrC, contains DUF1485 domain, at 62,788 to 64,287 _06392 H281DRAFT_06393: H281DRAFT_06393 - N-carbamoyl-L-amino-acid hydrolase, at 64,284 to 65,582 _06393 H281DRAFT_06394: H281DRAFT_06394 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 65,615 to 66,316 _06394 H281DRAFT_06395: H281DRAFT_06395 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 66,313 to 67,080 _06395 H281DRAFT_06396: H281DRAFT_06396 - amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-), at 67,077 to 68,141 _06396
Group Condition H281DRAFT_06392 H281DRAFT_06393 H281DRAFT_06394 H281DRAFT_06395 H281DRAFT_06396
carbon source adipate (C) +0.1 -0.5 -1.1 N.D. -0.5
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 +0.0 -1.1 N.D. -0.5
carbon source Hexanoic (C) -0.1 -0.8 +0.1 N.D. -0.2
carbon source propionate (C) +0.2 -0.3 -0.7 N.D. -0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 -1.2 +0.1 N.D. -0.1
phage Bu1_10 +0.2 -1.6 +0.4 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.2 -1.0 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 -0.6 +0.2 N.D. -0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 +0.6 -0.9 N.D. -0.2
carbon source Valeric (C) +0.4 -0.4 -0.3 N.D. +0.1
carbon source acetate (C) +0.1 +0.6 -0.6 N.D. -0.1
carbon source Dodecandioic (C) +0.1 -0.5 +0.5 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.2 +0.7 -0.6 N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 -0.5 +0.7 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 +1.2 -0.6 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 +1.4 -0.5 N.D. -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.2 +1.2 -0.5 N.D. +0.0
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 +0.2 +0.5 N.D. -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.4 +1.6 -0.3 N.D. -0.3
phage Bu1_100 +0.5 +0.0 +0.4 N.D. -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 +1.0 -0.2 N.D. +0.1
carbon source 2-Deoxy-D-Ribose (C) +0.2 +0.6 +0.2 N.D. -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 +0.7 +0.2 N.D. +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 +1.3 -0.5 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.7 +0.1 N.D. -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.1 +1.6 -0.4 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.3 +0.8 +0.7 N.D. -0.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 +1.3 +0.1 N.D. +0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 -0.0 +1.1 N.D. -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.4 +1.0 N.D. -0.1
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