Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06344 and H281DRAFT_06345 are separated by 135 nucleotidesH281DRAFT_06345 and H281DRAFT_06346 are separated by 32 nucleotidesH281DRAFT_06346 and H281DRAFT_06347 are separated by 35 nucleotidesH281DRAFT_06347 and H281DRAFT_06348 are separated by 349 nucleotides H281DRAFT_06344: H281DRAFT_06344 - transcriptional regulator, LysR family, at 18,362 to 19,285 _06344 H281DRAFT_06345: H281DRAFT_06345 - tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase, at 19,421 to 20,503 _06345 H281DRAFT_06346: H281DRAFT_06346 - Predicted deacylase, at 20,536 to 21,525 _06346 H281DRAFT_06347: H281DRAFT_06347 - hypothetical protein, at 21,561 to 21,905 _06347 H281DRAFT_06348: H281DRAFT_06348 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 22,255 to 23,613 _06348
Group Condition H281DRAFT_06344 H281DRAFT_06345 H281DRAFT_06346 H281DRAFT_06347 H281DRAFT_06348
carbon source Protocatechuic Acid (C) -0.2 -0.0 +0.9 -0.0 -3.3
carbon source Protocatechuic Acid (C) +0.2 +0.1 +0.6 +0.1 -2.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.1 -0.3 +0.0 -0.4
carbon source acetate (C) +0.1 +0.1 +0.3 -1.5 -0.4
carbon source butyrate (C) -0.3 -0.3 -0.3 -0.5 +0.2
carbon source adipate (C) +0.0 +0.5 -0.3 -1.4 +0.0
carbon source Protocatechuic Acid (C) +0.1 +0.1 +0.1 -1.4 -0.1
carbon source Protocatechuic Acid (C) +0.1 -0.3 +0.2 -0.6 -0.6
carbon source Hexanoic (C) -0.5 -1.1 +0.6 +0.0 +0.1
carbon source propionate (C) +0.3 -0.6 +0.2 -0.5 +0.2
carbon source D-Glucose (C) -0.2 -0.4 +0.4 -0.6 +0.3
carbon source D-Glucose (C) -0.4 -0.1 +0.6 -0.6 +0.1
carbon source 3-Hydroxypropionate (C) +0.4 -0.1 +0.5 -1.1 -0.1
carbon source propionate (C) +0.4 -0.2 +0.5 -0.7 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 -0.8 +0.0 -0.2 +0.5
carbon source Malonic (C) +0.7 -0.5 +0.4 -0.7 +0.1
carbon source butyrate (C) +0.3 -0.2 +0.6 -0.2 -0.5
carbon source Valeric (C) -0.1 -0.0 +1.0 -0.3 -0.2
carbon source Malonic (C) +0.9 -0.4 +0.4 -0.3 -0.2
carbon source 2-Deoxy-D-Ribose (C) +0.0 -0.5 +0.7 +0.2 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 +0.4 +0.5 +0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.1 +0.5 +0.5 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 +0.3 +0.5 +0.4 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.6 +0.1 +0.6 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.2 +1.0 +0.3 -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 +0.7 +0.6 +0.5 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +0.4 +0.9 +0.8 -0.2
phage Bu1_100 +0.9 +0.7 -0.0 +0.7 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 +0.1 +0.5 +1.2 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.0 +0.1 +1.2 +0.6 +0.4
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