Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06329 and H281DRAFT_06330 overlap by 4 nucleotidesH281DRAFT_06330 and H281DRAFT_06331 overlap by 4 nucleotidesH281DRAFT_06331 and H281DRAFT_06332 overlap by 16 nucleotidesH281DRAFT_06332 and H281DRAFT_06333 overlap by 4 nucleotides H281DRAFT_06329: H281DRAFT_06329 - transcriptional regulator, AraC family, at 3,009 to 3,419 _06329 H281DRAFT_06330: H281DRAFT_06330 - sarcosine oxidase subunit beta, at 3,416 to 4,585 _06330 H281DRAFT_06331: H281DRAFT_06331 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 4,582 to 5,973 _06331 H281DRAFT_06332: H281DRAFT_06332 - Uncharacterized anaerobic dehydrogenase, at 5,958 to 6,272 _06332 H281DRAFT_06333: H281DRAFT_06333 - peptide/nickel transport system ATP-binding protein, at 6,269 to 8,113 _06333
Group Condition H281DRAFT_06329 H281DRAFT_06330 H281DRAFT_06331 H281DRAFT_06332 H281DRAFT_06333
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.9 +0.1 +0.0 N.D. +0.1
phage Bu1_100 -0.0 -0.1 +0.3 N.D. -1.6
phage Bu1_10 -0.9 -0.0 -0.1 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.8 -0.1 +0.0 N.D. -0.1
carbon source butyrate (C) +0.6 -0.6 -0.3 N.D. -0.5
carbon source Malonic (C) +0.2 -0.4 -0.1 N.D. -0.3
carbon source Sebacic (C) -0.3 -0.5 +0.2 N.D. +0.1
carbon source Protocatechuic Acid (C) -0.3 -0.3 +0.3 N.D. -0.0
carbon source Azelaic (C) +0.7 -0.2 -0.1 N.D. -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 -0.4 +0.2 N.D. +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 -0.3 -0.3 N.D. +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -0.2 +0.0 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.0 -0.0 N.D. -0.4
lb LB -0.0 -0.4 -0.1 N.D. +0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.0 +0.4 +0.2 N.D. -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 +0.4 +0.3 N.D. -0.3
carbon source butyrate (C) +0.2 -0.1 +0.5 N.D. -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 -0.3 +0.4 N.D. +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.8 -0.3 +0.2 N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.3 +0.2 +0.4 N.D. -0.1
carbon source D-Glucose 20 mM (C) +0.4 -0.1 +0.3 N.D. +0.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +0.2 +0.2 N.D. +0.1
carbon source propionate (C) +0.2 +0.5 +0.2 N.D. +0.2
carbon source p-Coumaric (C) +0.3 +0.1 +0.3 N.D. +0.3
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 +0.0 +0.3 N.D. +0.4
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +0.1 +0.4 N.D. +0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 -0.0 +0.4 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.1 +0.1 N.D. +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 +0.6 +0.2 N.D. +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.6 +0.2 +0.4 N.D. +0.1
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