Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06320 and H281DRAFT_06321 are separated by 147 nucleotidesH281DRAFT_06321 and H281DRAFT_06322 are separated by 91 nucleotidesH281DRAFT_06322 and H281DRAFT_06323 are separated by 36 nucleotidesH281DRAFT_06323 and H281DRAFT_06324 are separated by 272 nucleotides H281DRAFT_06320: H281DRAFT_06320 - biopolymer transport protein ExbD, at 103,876 to 104,307 _06320 H281DRAFT_06321: H281DRAFT_06321 - leucyl-tRNA synthetase, at 104,455 to 107,046 _06321 H281DRAFT_06322: H281DRAFT_06322 - LPS-assembly lipoprotein, at 107,138 to 107,692 _06322 H281DRAFT_06323: H281DRAFT_06323 - DNA polymerase III, delta subunit, at 107,729 to 108,853 _06323 H281DRAFT_06324: H281DRAFT_06324 - glutamate-5-semialdehyde dehydrogenase, at 109,126 to 110,397 _06324
Group Condition H281DRAFT_06320 H281DRAFT_06321 H281DRAFT_06322 H281DRAFT_06323 H281DRAFT_06324
carbon source 4-Hydroxybenzoic Acid (C) +0.5 N.D. -6.7 N.D. -1.2
carbon source Hexanoic (C) +0.1 N.D. -6.0 N.D. -0.4
carbon source Phenylacetic (C) -0.2 N.D. -5.9 N.D. -0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 N.D. -6.3 N.D. +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.6 N.D. -6.3 N.D. +0.2
carbon source p-Coumaric (C) +0.2 N.D. -4.2 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 N.D. -3.1 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.7 N.D. -3.5 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 N.D. -3.1 N.D. +0.0
carbon source p-Coumaric (C) +0.1 N.D. -2.9 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -2.7 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -2.6 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -2.8 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. -3.0 N.D. +0.2
carbon source D-Glucose (C) -0.4 N.D. -2.0 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 N.D. -2.7 N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 N.D. -3.1 N.D. +0.2
carbon source Hexanoic (C) +0.6 N.D. -3.1 N.D. +0.0
carbon source Phenylacetic (C) -0.4 N.D. -1.9 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -2.3 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.4 N.D. -1.9 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -1.8 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.1 N.D. -1.5 N.D. -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.5 N.D. -2.0 N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.4 N.D. -1.6 N.D. -0.2
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 N.D. -1.7 N.D. +0.6
carbon source Dodecandioic (C) +0.8 N.D. -1.9 N.D. +0.1
carbon source Sebacic (C) +0.8 N.D. -1.0 N.D. +0.6
phage Bu1_100 -0.2 N.D. +2.3 N.D. +0.0
phage Bu1_10 -0.0 N.D. +2.3 N.D. +0.1
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