Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06192 and H281DRAFT_06193 are separated by 412 nucleotidesH281DRAFT_06193 and H281DRAFT_06194 are separated by 80 nucleotidesH281DRAFT_06194 and H281DRAFT_06195 are separated by 276 nucleotidesH281DRAFT_06195 and H281DRAFT_06196 are separated by 33 nucleotides H281DRAFT_06192: H281DRAFT_06192 - hypothetical protein, at 81,002 to 81,835 _06192 H281DRAFT_06193: H281DRAFT_06193 - hypothetical protein, at 82,248 to 83,075 _06193 H281DRAFT_06194: H281DRAFT_06194 - Proteolipid membrane potential modulator, at 83,156 to 83,350 _06194 H281DRAFT_06195: H281DRAFT_06195 - hypothetical protein, at 83,627 to 83,890 _06195 H281DRAFT_06196: H281DRAFT_06196 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 83,924 to 85,891 _06196
Group Condition H281DRAFT_06192 H281DRAFT_06193 H281DRAFT_06194 H281DRAFT_06195 H281DRAFT_06196
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.3 -0.9 -0.5 +0.0
carbon source Hydroxy-L-Proline (C) +0.1 -0.2 -1.4 +0.2 +0.1
carbon source p-Coumaric (C) +0.0 -0.1 -0.8 -0.1 +0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.2 -0.7 -0.3 +0.1
carbon source 2-furoic (C) +0.1 -0.1 -0.9 +0.1 -0.1
carbon source acetate (C) -0.0 -0.1 +0.0 -0.9 +0.2
phage Bu1_100 -0.2 -0.2 -1.0 +0.3 +0.4
carbon source 2-Deoxy-D-Ribose (C) +0.0 +0.1 -0.8 +0.1 +0.1
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.1 -0.8 +0.1 +0.1
phage Bu1_10 -0.2 -0.3 +0.2 -0.2 +0.0
carbon source 2-Deoxy-D-Ribose (C) -0.0 +0.1 -0.6 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.1 -0.6 +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.2 -0.6 -0.1 +0.3
carbon source Gallic Acid (C) -0.2 +0.1 +0.5 -0.2 -0.2
carbon source Protocatechuic Acid (C) +0.1 -0.2 +0.5 -0.3 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.4 +0.1 -0.5 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 +0.5 +0.3 -0.3 +0.1
lb LB +0.0 +0.2 +0.5 -0.3 +0.2
carbon source Malonic (C) +0.1 +0.2 +0.7 -0.1 -0.2
carbon source Hexanoic (C) -0.0 +0.2 +0.2 +0.4 -0.1
phage Bu1_100 -0.1 -0.0 +0.6 +0.3 -0.0
carbon source Sebacic (C) +0.2 -0.0 +1.2 -0.5 -0.1
carbon source propionate (C) -0.0 -0.0 +0.9 +0.0 +0.0
carbon source adipate (C) -0.0 +0.2 +0.7 -0.1 +0.1
carbon source Valeric (C) +0.1 +0.0 +0.5 +0.3 -0.1
carbon source Malonic (C) -0.0 -0.1 +1.0 -0.1 +0.1
carbon source Dodecandioic (C) -0.1 +0.5 +0.8 -0.3 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 +0.0 +0.4 +0.4 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 +0.4 +0.5 +0.0 +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.0 +0.6 +0.7 -0.0 +0.1
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