Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06082 and H281DRAFT_06083 are separated by 174 nucleotidesH281DRAFT_06083 and H281DRAFT_06084 are separated by 143 nucleotidesH281DRAFT_06084 and H281DRAFT_06085 are separated by 446 nucleotidesH281DRAFT_06085 and H281DRAFT_06086 are separated by 115 nucleotides H281DRAFT_06082: H281DRAFT_06082 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 98,477 to 101,311 _06082 H281DRAFT_06083: H281DRAFT_06083 - heat shock protein Hsp20, at 101,486 to 102,121 _06083 H281DRAFT_06084: H281DRAFT_06084 - Uncharacterized membrane protein HdeD, DUF308 family, at 102,265 to 102,840 _06084 H281DRAFT_06085: H281DRAFT_06085 - transcriptional regulator, AraC family, at 103,287 to 104,114 _06085 H281DRAFT_06086: H281DRAFT_06086 - Osmotically-inducible protein OsmY, contains BON domain, at 104,230 to 104,883 _06086
Group Condition H281DRAFT_06082 H281DRAFT_06083 H281DRAFT_06084 H281DRAFT_06085 H281DRAFT_06086
carbon source Azelaic (C) +0.1 -0.9 +0.4 -1.0 N.D.
carbon source Phenylacetic (C) +0.1 -1.4 -0.0 +0.1 N.D.
carbon source 3-hydroxybutyric (C) -0.2 -0.9 +0.0 -0.1 N.D.
carbon source D-Glucose (C) -0.0 -0.7 +0.1 -0.4 N.D.
carbon source Malonic (C) -0.2 -0.9 -0.2 +0.3 N.D.
carbon source Protocatechuic Acid (C) -0.2 +0.0 +0.2 -0.9 N.D.
phage Bu1_100 +0.0 -1.0 -0.2 +0.4 N.D.
ecofab LB in EcoFAB_3.5mL +0.0 -0.9 +0.1 +0.2 N.D.
carbon source D-Glucose (C) +0.1 -0.6 -0.3 +0.2 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 -0.6 +0.3 -0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 -0.7 -0.0 +0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.6 -0.2 +0.4 N.D.
carbon source Sebacic (C) +0.3 -1.1 +0.5 -0.1 N.D.
carbon source Valeric (C) +0.1 +0.3 +0.1 -0.8 N.D.
carbon source adipate (C) +0.1 +0.3 +0.2 -0.8 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 -1.0 +0.4 +0.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.1 -0.4 +0.4 -0.3 N.D.
carbon source Dodecandioic (C) -0.2 -0.5 +0.4 +0.4 N.D.
carbon source Malonic (C) -0.3 +0.7 -0.1 -0.1 N.D.
phage Bu1_100 +0.0 -0.7 +0.5 +0.5 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.3 +0.2 -0.4 N.D.
carbon source D-Glucose (C) -0.0 +0.9 -0.1 -0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.3 -0.4 +0.7 +0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.3 -0.4 +0.6 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +1.1 +0.1 -0.2 N.D.
carbon source Hexanoic (C) +0.2 +0.2 -0.1 +0.6 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.1 +0.4 -0.1 +0.6 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 +0.4 +0.5 +0.4 N.D.
carbon source butyrate (C) +0.2 +0.5 +0.6 -0.1 N.D.
carbon source adipate (C) +0.1 +0.8 +0.4 +0.4 N.D.
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