Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06080 and H281DRAFT_06081 are separated by 59 nucleotidesH281DRAFT_06081 and H281DRAFT_06082 are separated by 53 nucleotidesH281DRAFT_06082 and H281DRAFT_06083 are separated by 174 nucleotidesH281DRAFT_06083 and H281DRAFT_06084 are separated by 143 nucleotides H281DRAFT_06080: H281DRAFT_06080 - thioredoxin reductase (NADPH), at 96,856 to 98,091 _06080 H281DRAFT_06081: H281DRAFT_06081 - ubiquitin-hydrolase Zn-finger-containing protein, at 98,151 to 98,423 _06081 H281DRAFT_06082: H281DRAFT_06082 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 98,477 to 101,311 _06082 H281DRAFT_06083: H281DRAFT_06083 - heat shock protein Hsp20, at 101,486 to 102,121 _06083 H281DRAFT_06084: H281DRAFT_06084 - Uncharacterized membrane protein HdeD, DUF308 family, at 102,265 to 102,840 _06084
Group Condition H281DRAFT_06080 H281DRAFT_06081 H281DRAFT_06082 H281DRAFT_06083 H281DRAFT_06084
carbon source 3-hydroxybutyric (C) +0.0 -0.7 -0.2 -0.9 +0.0
carbon source Malonic (C) -0.0 -0.3 -0.2 -0.9 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -0.6 -0.1 -0.5 -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 -0.8 +0.0 -0.5 +0.3
carbon source 4-Methyl-2-oxopentanoic (C) -0.1 -1.3 +0.1 +0.1 +0.0
carbon source D-Glucose (C) +0.0 -1.1 -0.2 +0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.3 +0.1 +0.1 -0.0
carbon source Azelaic (C) +0.0 -0.6 +0.1 -0.9 +0.4
carbon source Dodecandioic (C) +0.1 -0.7 -0.2 -0.5 +0.4
carbon source Phenylacetic (C) +0.1 +0.5 +0.1 -1.4 -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 -0.1 +0.3 -1.0 +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 -0.6 +0.3 -0.4 +0.2
phage Bu1_100 +0.0 +0.9 +0.0 -1.0 -0.2
carbon source D-Glucose (C) +0.0 +0.6 +0.1 -0.6 -0.3
carbon source Sebacic (C) +0.2 -0.0 +0.3 -1.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.9 -0.3 +1.1 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 -0.2 +0.3 -0.4 +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.1 -0.2 +0.3 -0.4 +0.7
carbon source D-Glucose (C) +0.2 +0.3 -0.0 +0.9 -0.1
carbon source Hexanoic (C) -0.0 +1.1 +0.2 +0.2 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.9 +0.0 +0.4 +0.3
phage Bu1_10 -0.1 +1.0 +0.2 +0.5 -0.2
carbon source D-Galactose (C) +0.0 +1.0 -0.1 +0.6 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.8 -0.2 +0.4 +0.5
carbon source D-Glucose (C) +0.2 +0.8 +0.0 +0.6 +0.0
carbon source Protocatechuic Acid (C) +0.1 +1.4 -0.1 +0.1 +0.2
carbon source butyrate (C) -0.0 +0.8 +0.2 +0.5 +0.6
carbon source Malonic (C) +0.2 +1.6 -0.3 +0.7 -0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +1.2 +0.0 +0.4 +0.4
carbon source adipate (C) -0.0 +1.4 +0.1 +0.8 +0.4
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