Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06054 and H281DRAFT_06055 are separated by 73 nucleotidesH281DRAFT_06055 and H281DRAFT_06056 are separated by 93 nucleotidesH281DRAFT_06056 and H281DRAFT_06057 are separated by 51 nucleotidesH281DRAFT_06057 and H281DRAFT_06058 are separated by 33 nucleotides H281DRAFT_06054: H281DRAFT_06054 - maltooligosyl trehalose synthase, at 66,164 to 69,019 _06054 H281DRAFT_06055: H281DRAFT_06055 - Hemolysin, contains CBS domains, at 69,093 to 70,436 _06055 H281DRAFT_06056: H281DRAFT_06056 - histidine kinase (EC 2.7.13.3), at 70,530 to 71,465 _06056 H281DRAFT_06057: H281DRAFT_06057 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 71,517 to 71,858 _06057 H281DRAFT_06058: H281DRAFT_06058 - transcriptional regulator, AraC family, at 71,892 to 72,674 _06058
Group Condition H281DRAFT_06054 H281DRAFT_06055 H281DRAFT_06056 H281DRAFT_06057 H281DRAFT_06058
phage Bu1_10 +0.0 -1.0 -1.0 N.D. -0.3
phage Bu1_100 -0.1 -0.5 -1.1 N.D. -0.2
phage Bu1_100 -0.0 -0.6 -1.0 N.D. +0.6
carbon source Azelaic (C) +0.4 -0.4 +1.4 N.D. -0.9
carbon source Protocatechuic Acid (C) +0.1 -0.6 +1.4 N.D. -0.2
carbon source propionate (C) -0.1 +0.1 +1.1 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.2 -0.2 +1.0 N.D. -0.1
carbon source L-Glutamic (C) -0.0 -0.1 +1.2 N.D. -0.2
carbon source Protocatechuic Acid (C) +0.2 -0.9 +1.5 N.D. +0.2
carbon source Malonic (C) +0.3 -0.3 +1.1 N.D. +0.2
carbon source Hexanoic (C) +0.0 -0.5 +2.0 N.D. -0.2
carbon source Pimelic (C) +0.1 -0.1 +1.6 N.D. -0.2
carbon source 3-Hydroxypropionate (C) +0.1 +0.0 +1.5 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.3 +0.5 N.D. +0.2
carbon source Valeric (C) -0.0 +0.0 +1.2 N.D. +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.3 +0.3 +0.5 N.D. +0.5
carbon source L-Glutamic (C) +0.1 +0.3 +1.3 N.D. -0.1
carbon source 2-furoic (C) -0.0 +0.2 +1.2 N.D. +0.3
ecofab LB in EcoFAB_3.5mL +0.0 +0.1 +1.2 N.D. +0.4
carbon source Suberic (C) +0.1 -0.1 +1.8 N.D. -0.1
carbon source 3-Hydroxypropionate (C) +0.2 +0.2 +1.4 N.D. +0.1
carbon source Sebacic (C) +0.4 -0.0 +1.2 N.D. +0.3
carbon source Malonic (C) +0.1 -0.0 +1.7 N.D. +0.1
carbon source Hexanoic (C) +0.3 +0.1 +1.4 N.D. +0.4
carbon source Hydroxy-L-Proline (C) -0.0 +0.2 +2.0 N.D. +0.0
carbon source butyrate (C) -0.1 +0.2 +2.5 N.D. -0.2
carbon source Dodecandioic (C) +0.2 -0.3 +2.5 N.D. +0.0
carbon source butyrate (C) +0.1 -0.0 +2.4 N.D. +0.2
carbon source adipate (C) +0.4 +0.2 +2.3 N.D. +0.1
carbon source adipate (C) +0.2 +0.1 +2.5 N.D. +0.6
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