Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06003 and H281DRAFT_06004 are separated by 84 nucleotidesH281DRAFT_06004 and H281DRAFT_06005 are separated by 440 nucleotidesH281DRAFT_06005 and H281DRAFT_06006 are separated by 279 nucleotidesH281DRAFT_06006 and H281DRAFT_06007 are separated by 105 nucleotides H281DRAFT_06003: H281DRAFT_06003 - Pimeloyl-ACP methyl ester carboxylesterase, at 4,408 to 5,202 _06003 H281DRAFT_06004: H281DRAFT_06004 - protein of unknown function (DUF4148), at 5,287 to 5,637 _06004 H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788 _06005 H281DRAFT_06006: H281DRAFT_06006 - MEKHLA domain-containing protein, at 7,068 to 7,523 _06006 H281DRAFT_06007: H281DRAFT_06007 - amino acid ABC transporter substrate-binding protein, PAAT family, at 7,629 to 8,360 _06007
Group Condition H281DRAFT_06003 H281DRAFT_06004 H281DRAFT_06005 H281DRAFT_06006 H281DRAFT_06007
carbon source D-Glucose (C) -0.8 N.D. +0.2 +0.0 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.5 N.D. -0.2 +0.5 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.6 N.D. +0.0 +0.4 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.5 N.D. -0.1 +0.3 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.6 N.D. +0.0 +0.5 +0.1
carbon source Gallic Acid (C) +0.4 N.D. +0.1 -0.5 +0.0
ecofab LB in EcoFAB_3.5mL +0.6 N.D. -0.0 -0.5 -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.8 N.D. -0.1 -0.1 -0.1
carbon source propionate (C) +0.2 N.D. +0.1 -0.3 +0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.6 N.D. +0.1 -0.2 +0.1
phage Bu1_100 +0.7 N.D. -0.1 -0.1 +0.2
carbon source 2'-Deoxyinosine 10 mM (C) +0.9 N.D. -0.1 -0.2 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 N.D. -0.2 +0.2 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 N.D. +0.1 +0.5 +0.3
carbon source Hexanoic (C) +0.6 N.D. +0.2 -0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.2 N.D. +0.3 -0.2 +0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.9 N.D. -0.1 -0.1 +0.2
carbon source D-Glucose (C) +0.8 N.D. -0.1 +0.1 +0.3
carbon source D-Glucose (C) +0.4 N.D. +0.2 +0.3 +0.2
carbon source L-Glutamic (C) +0.5 N.D. +0.2 +0.3 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +1.0 N.D. -0.1 +0.1 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 N.D. +0.1 +0.5 +0.2
carbon source acetate (C) +0.6 N.D. +0.1 +0.1 +0.4
carbon source Sebacic (C) +1.0 N.D. +0.1 -0.3 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +1.2 N.D. -0.0 -0.0 +0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.5 N.D. +0.0 +0.4 +0.3
carbon source Glycerol (C) +0.8 N.D. +0.1 +0.4 +0.0
carbon source Phenylacetic (C) +0.2 N.D. +0.3 +0.4 +0.3
carbon source Protocatechuic Acid (C) +1.0 N.D. +0.1 +0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. +0.2 +0.9 +0.1
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