Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_06000 and H281DRAFT_06001 are separated by 95 nucleotidesH281DRAFT_06001 and H281DRAFT_06002 overlap by 4 nucleotidesH281DRAFT_06002 and H281DRAFT_06003 are separated by 271 nucleotidesH281DRAFT_06003 and H281DRAFT_06004 are separated by 84 nucleotides H281DRAFT_06000: H281DRAFT_06000 - transcriptional regulator, AraC family, at 2,015 to 2,806 _06000 H281DRAFT_06001: H281DRAFT_06001 - hypothetical protein, at 2,902 to 3,186 _06001 H281DRAFT_06002: H281DRAFT_06002 - NADPH:quinone reductase, at 3,183 to 4,136 _06002 H281DRAFT_06003: H281DRAFT_06003 - Pimeloyl-ACP methyl ester carboxylesterase, at 4,408 to 5,202 _06003 H281DRAFT_06004: H281DRAFT_06004 - protein of unknown function (DUF4148), at 5,287 to 5,637 _06004
Group Condition H281DRAFT_06000 H281DRAFT_06001 H281DRAFT_06002 H281DRAFT_06003 H281DRAFT_06004
carbon source Malonic (C) -0.9 N.D. -0.3 +0.0 N.D.
carbon source adipate (C) -0.5 N.D. -0.7 +0.1 N.D.
carbon source adipate (C) -0.7 N.D. -0.6 +0.5 N.D.
carbon source propionate (C) -1.1 N.D. -0.2 +0.7 N.D.
carbon source succinate (C) -0.7 N.D. +0.5 +0.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.8 N.D. +0.0 -0.6 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.5 N.D. +0.3 -0.6 N.D.
carbon source Sebacic (C) -0.2 N.D. -0.5 +1.0 N.D.
phage Bu1_10 -0.4 N.D. +0.2 +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. -0.4 +0.5 N.D.
carbon source Gallic Acid (C) -0.5 N.D. +0.8 +0.4 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.4 N.D. +0.7 +0.8 N.D.
carbon source Protocatechuic Acid (C) -0.1 N.D. +0.2 +1.0 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.3 N.D. +0.4 +1.0 N.D.
control NoPhageControl +0.7 N.D. +0.4 +0.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.3 N.D. +0.5 +0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 N.D. +0.7 +0.2 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 N.D. +0.4 +0.5 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.6 N.D. +0.4 +0.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 N.D. +0.7 +0.4 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 N.D. +0.7 +0.9 N.D.
carbon source Phenylacetic (C) +0.3 N.D. +0.4 +0.7 N.D.
ecofab LB in EcoFAB_3.5mL +0.3 N.D. +0.5 +0.6 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. +0.6 +0.2 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 N.D. +0.8 +0.6 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.8 N.D. +0.9 +0.4 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.6 N.D. +1.0 +0.6 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.7 N.D. +0.8 +0.7 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 N.D. +0.9 +1.2 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.9 N.D. +0.6 +0.9 N.D.
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