Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05989 and H281DRAFT_05990 are separated by 140 nucleotidesH281DRAFT_05990 and H281DRAFT_05991 are separated by 54 nucleotidesH281DRAFT_05991 and H281DRAFT_05992 are separated by 26 nucleotidesH281DRAFT_05992 and H281DRAFT_05993 are separated by 1 nucleotides H281DRAFT_05989: H281DRAFT_05989 - Sortase and related acyltransferases, at 132,106 to 132,621 _05989 H281DRAFT_05990: H281DRAFT_05990 - DNA-binding transcriptional regulator, LysR family, at 132,762 to 133,757 _05990 H281DRAFT_05991: H281DRAFT_05991 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase, at 133,812 to 135,200 _05991 H281DRAFT_05992: H281DRAFT_05992 - MFS transporter, MHS family, proline/betaine transporter, at 135,227 to 136,528 _05992 H281DRAFT_05993: H281DRAFT_05993 - Kynureninase, at 136,530 to 137,663 _05993
Group Condition H281DRAFT_05989 H281DRAFT_05990 H281DRAFT_05991 H281DRAFT_05992 H281DRAFT_05993
carbon source Sebacic (C) -0.2 N.D. +0.0 +0.2 -2.0
carbon source 2-Deoxy-D-Ribose (C) -0.1 N.D. -0.0 -0.0 -1.6
phage Bu1_100 +0.0 N.D. -0.5 -0.3 -0.8
carbon source adipate (C) +0.0 N.D. -0.7 -0.5 -0.1
carbon source D-Glucose (C) +0.1 N.D. -0.1 -0.1 -1.1
phage Bu1_10 +0.2 N.D. -0.8 -0.3 -0.2
carbon source Phenylacetic (C) -0.1 N.D. -0.2 +0.1 -0.9
carbon source Hexanoic (C) +0.0 N.D. -0.6 +0.3 -0.7
carbon source Pimelic (C) +0.0 N.D. +0.3 -0.3 -0.9
carbon source Gallic Acid (C) -0.1 N.D. +0.0 +0.3 -1.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 N.D. +0.4 -0.1 -0.9
carbon source propionate (C) +0.1 N.D. -0.7 -0.3 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 N.D. +0.2 +0.2 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +0.1 +0.3 -0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 N.D. +0.6 +0.2 -0.9
carbon source D-Glucose 20 mM (C) +0.2 N.D. +0.4 +0.5 -1.2
carbon source Valeric (C) +0.3 N.D. +0.1 +0.5 -0.4
carbon source butyrate (C) +0.0 N.D. -0.5 +0.2 +0.8
ecofab LB in EcoFAB_3.5mL +0.4 N.D. +0.3 +0.3 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 N.D. +0.8 +0.3 -0.5
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 N.D. +0.4 +0.4 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. +0.6 +0.4 -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 N.D. +0.6 +0.4 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -0.1 +0.3 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. +0.0 +0.0 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -0.2 +0.3 +1.1
carbon source succinate (C) +0.3 N.D. +0.1 +0.0 +0.8
carbon source D-Glucose (C) +0.2 N.D. +0.0 +0.1 +1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 N.D. +0.1 +0.2 +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 N.D. +0.2 +0.2 +1.1
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