Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05965 and H281DRAFT_05966 are separated by 115 nucleotidesH281DRAFT_05966 and H281DRAFT_05967 are separated by 68 nucleotidesH281DRAFT_05967 and H281DRAFT_05968 are separated by 291 nucleotidesH281DRAFT_05968 and H281DRAFT_05969 are separated by 266 nucleotides H281DRAFT_05965: H281DRAFT_05965 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 106,748 to 107,617 _05965 H281DRAFT_05966: H281DRAFT_05966 - transcriptional regulator, LysR family, at 107,733 to 108,746 _05966 H281DRAFT_05967: H281DRAFT_05967 - Cupredoxin-like domain-containing protein, at 108,815 to 109,231 _05967 H281DRAFT_05968: H281DRAFT_05968 - 40-residue YVTN family beta-propeller repeat-containing protein, at 109,523 to 110,584 _05968 H281DRAFT_05969: H281DRAFT_05969 - Uncharacterized proteins of the AP superfamily, at 110,851 to 112,539 _05969
Group Condition H281DRAFT_05965 H281DRAFT_05966 H281DRAFT_05967 H281DRAFT_05968 H281DRAFT_05969
phage Bu1_10 +0.2 -1.3 -3.3 +0.0 +0.4
carbon source Malonic (C) -0.1 -2.2 +0.1 +0.1 -0.1
carbon source adipate (C) +0.3 -0.0 -1.2 -0.2 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.3 -0.7 -0.4 +0.5 -0.6
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -0.7 -0.6 +0.1 -0.2
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.5 -0.7 -0.1 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.1 -0.8 -0.3 +0.1 -0.3
carbon source Hexanoic (C) -0.3 +0.6 -1.0 +0.1 -0.3
carbon source 2-Deoxy-D-Ribose (C) +0.0 +0.3 -1.0 -0.2 -0.1
carbon source butyrate (C) -0.6 -0.4 +0.6 -0.0 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.0 -0.9 +0.3 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 +0.2 -0.6 +0.3 -0.2
carbon source succinate (C) -0.2 -0.4 +0.7 -0.1 -0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 -1.0 +0.5 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.4 -0.8 +0.7 +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.0 -0.5 +0.3 +0.5 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 +0.2 +0.2 +0.5 -0.4
phage Bu1_100 +0.2 -0.4 +1.0 +0.5 -0.7
carbon source D-Glucose 20 mM (C) -0.4 +0.3 +0.5 +0.3 -0.1
carbon source D,L-Lactate (C) +0.2 -0.4 +0.3 +0.1 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.3 +0.3 +1.0 +0.2 -0.0
carbon source Hexanoic (C) -0.2 +0.9 +0.2 +0.4 -0.2
carbon source 2'-Deoxyinosine 10 mM (C) +0.3 +0.3 +0.9 +0.1 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.4 +0.5 +0.5 +0.0 -0.2
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.5 +0.3 -0.1 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.7 +0.5 -0.1 +0.3
carbon source Phenylacetic (C) +0.0 +0.6 +0.8 -0.0 +0.1
carbon source butyrate (C) +0.1 +0.6 +0.9 -0.0 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 +1.4 +1.8 +0.1 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +1.7 +1.2 +0.7 -0.2
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