Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05927 and H281DRAFT_05928 are separated by 410 nucleotidesH281DRAFT_05928 and H281DRAFT_05929 are separated by 25 nucleotidesH281DRAFT_05929 and H281DRAFT_05930 are separated by 247 nucleotidesH281DRAFT_05930 and H281DRAFT_05931 are separated by 224 nucleotides H281DRAFT_05927: H281DRAFT_05927 - Glycogen debranching enzyme (alpha-1,6-glucosidase), at 62,841 to 65,123 _05927 H281DRAFT_05928: H281DRAFT_05928 - hypothetical protein, at 65,534 to 65,935 _05928 H281DRAFT_05929: H281DRAFT_05929 - Pimeloyl-ACP methyl ester carboxylesterase, at 65,961 to 66,749 _05929 H281DRAFT_05930: H281DRAFT_05930 - rod shape-determining protein MreB, at 66,997 to 68,049 _05930 H281DRAFT_05931: H281DRAFT_05931 - phospholipase/carboxylesterase, at 68,274 to 68,933 _05931
Group Condition H281DRAFT_05927 H281DRAFT_05928 H281DRAFT_05929 H281DRAFT_05930 H281DRAFT_05931
phage Bu1_100 -0.5 -2.5 -0.1 +0.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 -1.3 +0.1 -0.6 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 -1.0 +0.0 -0.6 N.D.
carbon source p-Coumaric (C) +0.1 -1.4 -0.1 -0.1 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 -0.6 +0.0 -0.6 N.D.
carbon source Protocatechuic Acid (C) -0.1 -0.9 -0.3 -0.0 N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.5 -0.8 -0.0 +0.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.2 -0.2 -0.2 -0.6 N.D.
carbon source acetate (C) -0.1 -0.7 -0.4 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.5 +0.0 -0.5 N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.6 -0.5 -0.0 +0.0 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 -1.4 +0.0 -0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 -0.9 +0.3 -0.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 -0.8 -0.1 -0.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -0.6 +0.0 -0.6 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.4 -0.1 +0.1 N.D.
carbon source butyrate (C) +0.1 -0.6 -0.1 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.7 +0.2 -0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 -0.8 +0.2 -0.1 N.D.
carbon source D-Glucose 20 mM (C) +0.2 -0.8 +0.2 -0.0 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.3 -0.5 +0.3 +0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 -0.6 +0.1 -0.1 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -1.7 +0.5 +0.4 +0.6 N.D.
ecofab LB in EcoFAB_3.5mL +0.4 -0.5 +0.3 -0.3 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -0.5 +0.3 -0.1 N.D.
carbon source Dodecandioic (C) +0.2 +0.5 -0.0 -0.4 N.D.
carbon source butyrate (C) +0.0 +0.4 -0.6 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.6 +0.2 +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 -0.1 +0.5 -0.2 N.D.
carbon source adipate (C) +0.0 +1.0 -0.1 +0.2 N.D.
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