Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05883 and H281DRAFT_05884 are separated by 121 nucleotidesH281DRAFT_05884 and H281DRAFT_05885 are separated by 40 nucleotidesH281DRAFT_05885 and H281DRAFT_05886 are separated by 2 nucleotidesH281DRAFT_05886 and H281DRAFT_05887 overlap by 4 nucleotides H281DRAFT_05883: H281DRAFT_05883 - ornithine cyclodeaminase (EC 4.3.1.12), at 21,677 to 22,648 _05883 H281DRAFT_05884: H281DRAFT_05884 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 22,770 to 23,414 _05884 H281DRAFT_05885: H281DRAFT_05885 - dihydroxyacetone kinase DhaK subunit, at 23,455 to 24,444 _05885 H281DRAFT_05886: H281DRAFT_05886 - dihydroxyacetone kinase DhaL subunit, at 24,447 to 25,088 _05886 H281DRAFT_05887: H281DRAFT_05887 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 25,085 to 26,122 _05887
Group Condition H281DRAFT_05883 H281DRAFT_05884 H281DRAFT_05885 H281DRAFT_05886 H281DRAFT_05887
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.8 -0.6 N.D. -1.1
carbon source butyrate (C) +0.0 -0.7 -0.7 N.D. -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.7 +0.1 -0.8 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.9 -0.6 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.6 -0.3 N.D. -0.4
carbon source Gallic Acid (C) +0.1 -0.5 -0.5 N.D. -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 -0.5 -0.3 N.D. +0.2
carbon source Azelaic (C) +0.8 -1.2 -0.5 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.1 +0.2 N.D. -0.2
carbon source 2'-Deoxyinosine 5 mM (C) -0.7 +0.0 -0.4 N.D. +0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.7 +0.0 -0.3 N.D. +0.5
carbon source Sebacic (C) +0.2 -0.7 -0.8 N.D. +0.8
carbon source adipate (C) +0.8 -0.5 +0.4 N.D. -1.0
carbon source 3-hydroxybutyric (C) +0.1 -0.6 -0.8 N.D. +0.9
carbon source Hydroxy-L-Proline (C) +0.3 +0.8 -0.1 N.D. -1.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.4 -0.3 -0.6 N.D. +0.4
carbon source Suberic (C) -0.0 -0.8 +0.2 N.D. +0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -1.0 +0.6 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.4 -0.9 -0.1 N.D. -0.2
carbon source Pimelic (C) -0.2 -0.6 +0.5 N.D. +0.5
carbon source Malonic (C) +0.2 -0.5 +0.7 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 -0.3 -0.5 N.D. -0.3
carbon source butyrate (C) -0.1 -0.2 +0.6 N.D. +0.6
carbon source adipate (C) +0.5 -0.6 +0.4 N.D. +0.7
carbon source acetate (C) +0.5 -0.4 -0.1 N.D. +1.0
carbon source Valeric (C) -0.2 -0.3 +0.8 N.D. +0.7
carbon source Malonic (C) +0.3 -0.4 +0.7 N.D. +0.6
carbon source succinate (C) +0.5 -0.0 +0.9 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.2 +0.7 +0.4 N.D. +0.6
carbon source Valeric (C) +0.6 -0.2 +0.8 N.D. +1.0
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