Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05876 and H281DRAFT_05877 are separated by 83 nucleotidesH281DRAFT_05877 and H281DRAFT_05878 overlap by 4 nucleotidesH281DRAFT_05878 and H281DRAFT_05879 are separated by 31 nucleotidesH281DRAFT_05879 and H281DRAFT_05880 are separated by 75 nucleotides H281DRAFT_05876: H281DRAFT_05876 - transcriptional regulator, TetR family, at 12,335 to 12,955 _05876 H281DRAFT_05877: H281DRAFT_05877 - RND family efflux transporter, MFP subunit, at 13,039 to 14,154 _05877 H281DRAFT_05878: H281DRAFT_05878 - Multidrug efflux pump subunit AcrB, at 14,151 to 17,288 _05878 H281DRAFT_05879: H281DRAFT_05879 - DNA-binding transcriptional regulator, MarR family, at 17,320 to 18,009 _05879 H281DRAFT_05880: H281DRAFT_05880 - Aspartate/methionine/tyrosine aminotransferase, at 18,085 to 19,209 _05880
Group Condition H281DRAFT_05876 H281DRAFT_05877 H281DRAFT_05878 H281DRAFT_05879 H281DRAFT_05880
carbon source 4-Hydroxybenzoic Acid (C) -3.3 +0.2 +0.4 +0.5 -1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.5 +0.3 +0.1 -0.2 -0.1
carbon source adipate (C) -0.5 -0.6 -0.0 -0.2 -0.9
control NoPhageControl -1.0 -0.3 -0.0 -0.4 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) -1.5 -0.0 -0.2 -0.7 +0.4
carbon source p-Coumaric (C) -0.7 -0.3 +0.1 +0.3 -1.2
phage Bu1_100 -2.1 +1.1 -0.2 -0.8 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 +0.5 -0.1 -0.2 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.3 +0.4 -0.1 -0.7 +0.2
phage Bu1_10 -1.2 +0.3 +0.0 -0.9 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.9 +0.0 -0.1 +0.5 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) -1.3 +0.1 +0.2 -0.3 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.0 +0.2 +0.3 -0.5 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.6 +0.5 +0.0 -0.1 +0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 -0.2 +0.1 +0.2 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.2 +0.9 +0.3 -0.9 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.8 +0.7 -0.1 -0.3 +0.4
carbon source 2-Deoxy-D-Ribose (C) -0.9 -0.3 -0.2 -0.1 +0.6
carbon source succinate (C) -1.2 -0.1 +0.5 +0.3 -0.3
ecofab LB in EcoFAB_3.5mL -1.4 +0.3 +0.1 -0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 +0.8 +0.1 -0.2 +0.4
carbon source 2-Deoxy-D-Ribose (C) -1.1 -0.0 +0.2 -0.1 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.8 -0.1 +0.0 +0.9 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 +0.8 +0.5 -0.5 +0.4
carbon source Dodecandioic (C) -0.5 +0.2 -0.4 +0.3 +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.3 +1.1 -0.3 -0.3 -0.3
carbon source Phenylacetic (C) -0.1 -0.6 +0.2 +0.8 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.7 +0.4 +0.0 +1.1 +0.9
carbon source Azelaic (C) +2.1 -0.2 +0.1 +0.1 -0.5
carbon source Sebacic (C) +1.7 +0.5 -0.5 +0.2 -0.1
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