Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05853 and H281DRAFT_05854 are separated by 141 nucleotidesH281DRAFT_05854 and H281DRAFT_05855 are separated by 1 nucleotidesH281DRAFT_05855 and H281DRAFT_05856 are separated by 16 nucleotidesH281DRAFT_05856 and H281DRAFT_05857 are separated by 8 nucleotides H281DRAFT_05853: H281DRAFT_05853 - Protein of unknown function, at 133,024 to 133,839 _05853 H281DRAFT_05854: H281DRAFT_05854 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 133,981 to 135,069 _05854 H281DRAFT_05855: H281DRAFT_05855 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 135,071 to 135,622 _05855 H281DRAFT_05856: H281DRAFT_05856 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 135,639 to 136,442 _05856 H281DRAFT_05857: H281DRAFT_05857 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 136,451 to 136,735 _05857
Group Condition H281DRAFT_05853 H281DRAFT_05854 H281DRAFT_05855 H281DRAFT_05856 H281DRAFT_05857
carbon source Phenylacetic (C) -0.0 -5.7 -5.4 -5.0 -3.0
carbon source Phenylacetic (C) +0.3 -4.0 -4.0 -4.1 -2.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 -3.3 -2.2 -3.4 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.6 -0.5 -2.5 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 -1.2 -1.7 -1.5 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -1.9 -0.9 -1.4 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -1.9 -1.5 -1.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -1.4 -0.7 -1.7 -1.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.3 -0.8 -1.7 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.7 -0.7 -1.1 -0.9
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.2 -0.9 -0.8 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.2 -1.7 -0.9 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -1.0 -1.2 -0.9 -1.0
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.9 -0.4 -1.3 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -1.2 -0.2 -1.3 -0.7
lb LB +0.0 -1.4 -0.7 -0.6 -0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 -0.3 -0.5 -0.5 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.8 -0.0 -1.1 -0.5 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.5 -1.2 +0.1 -0.5 -1.5
lb LB -0.4 -0.8 -1.0 +0.0 -0.4
carbon source D,L-Lactate (C) -0.6 -0.5 -0.5 -0.1 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -1.2 -0.2 -0.5 -0.1
carbon source Azelaic (C) +0.5 +0.2 -1.3 -1.0 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 -0.7 -0.3 -0.8 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 -1.1 +0.1 +0.1 -0.6
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.2 -0.5 -0.5 -0.8 +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 -1.0 -1.0 +0.0 +0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.7 -0.8 -0.4 -0.2 +0.6
ecofab LB in EcoFAB_3.5mL -0.2 +0.5 -1.5 -0.1 +0.0
phage Bu1_100 +0.4 -0.4 -0.5 +0.4 +0.6
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