Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05771 and H281DRAFT_05772 are separated by 175 nucleotidesH281DRAFT_05772 and H281DRAFT_05773 are separated by 10 nucleotidesH281DRAFT_05773 and H281DRAFT_05774 are separated by 231 nucleotidesH281DRAFT_05774 and H281DRAFT_05775 are separated by 40 nucleotides H281DRAFT_05771: H281DRAFT_05771 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 44,549 to 45,337 _05771 H281DRAFT_05772: H281DRAFT_05772 - flagellar hook-associated protein 1 FlgK, at 45,513 to 47,486 _05772 H281DRAFT_05773: H281DRAFT_05773 - flagellar hook-associated protein 3 FlgL, at 47,497 to 48,720 _05773 H281DRAFT_05774: H281DRAFT_05774 - flagellar biosynthetic protein FliR, at 48,952 to 49,734 _05774 H281DRAFT_05775: H281DRAFT_05775 - flagellar biosynthetic protein FliQ, at 49,775 to 50,044 _05775
Group Condition H281DRAFT_05771 H281DRAFT_05772 H281DRAFT_05773 H281DRAFT_05774 H281DRAFT_05775
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.8 -1.9 -0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.7 -2.1 +0.2 -0.1
ecofab LB in EcoFAB_3.5mL +0.2 -0.7 -0.7 -1.1 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 -0.1 -1.1 +0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.8 -0.9 +0.4 +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.0 -1.1 +1.2 +1.0
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.4 -0.4 +0.8 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 -0.4 -0.6 +1.0 +1.2
carbon source D,L-Lactate (C) +0.1 -0.1 -0.5 +0.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.5 -0.5 +1.2 +1.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -0.3 -0.4 +0.5 +0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -0.3 -0.1 +0.4 +0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.0 -0.2 -0.1 +1.0 +0.6
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 +0.2 -0.3 +0.5 +0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 +0.1 -0.7 +1.3 +1.3
carbon source Gallic Acid (C) +0.4 +0.1 -0.3 +0.7 +0.5
carbon source 2-Deoxy-D-Ribose (C) -0.4 +0.3 +0.3 +0.6 +0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 -0.3 -0.3 +1.2 +1.8
carbon source butyrate (C) -0.0 +0.2 +0.5 +0.8 +0.3
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.2 -0.0 +1.0 +1.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.0 -0.0 +0.1 +0.9 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.3 -0.3 +1.5 +1.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 +0.0 +0.2 +1.1 +0.8
carbon source D-Glucose (C) -0.2 +0.5 +0.3 +0.7 +0.9
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.3 +0.2 +0.9 +1.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.0 -0.4 -0.1 +1.5 +1.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 +0.1 -0.1 +1.5 +1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.1 -0.0 +2.1 +2.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.0 -0.1 +2.0 +2.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.2 +0.2 +1.9 +2.0
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